Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02002 ATGGGTGGGAGCGAGAGCTCGAAGGGTGTGGTTATGGGTCGTTTGGTTGAGTGCGTGAAGGAGATTTCTGGGTTGCCAGAGTGTCAGAACTTTTGCAAGAGGGTGTATGGGAATTTGGTTCGTAGAGTGAAGCTGTTGAGTCCTCTCTTCGAGGAATTGAAGGATAGTGATGAGTCCCTAAGCGATGAACAGCTTCAAAGCTTTGAGTCTCTTTTGGTTGCTTTGGATTCAGCTAAGACCCTTTTAAAGGCTGTGAACCAAGGGAGTAAGCTTTATCAGGCTTTGCAGAGGAATGATACAGCAGATAAGTTCCAAAAAGTAACCGAAAAAATTGAAGCTGTGCTCAGTGAAATTCCTTACAACAAACTTGAGATATCAGAGGAAGTTCGAGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAGCTCAAACAGAATTTGTTGATATTCAACTAGACCTGGATATGGCATTAGCACAAAAAGAAAAAGACCCTGAGCCTGCTATACTCAAAAGACTTTCTGAGAAGTTGCATCTGAAGACAATAAATGACCTAAGGAAAGAGTCTACTGAATTGCATGAATTGTTGATCACAAACGGTGAAGTAGGAGACTCTTTTGAAATGATCACATCCCTTCTTAGCAAACTGAGGGATTGTGTGCTCAAAGAAAATCCAGAAGTTGACACCAGTGAATGTGAAAAATTGTCAGTTAAGCACAGGTCTCCTGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTAATTGTCTCTACCGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAAACACTTGTACATACAGCCCTCACCCCTAACTATGTTTTAAAGAGTCTGATTGCTTTGTGGTGCGAAAGCAATGGCATCGAGCTACCCAAGAAGCAAGGGAGCTGTAGAACAAAGAAGTGTGGTCCAAGCAGTCTTTCAGATTGTGATCGAAATGCTATTAGTGCTTTATTGTATAAACTAATGAGTAGCGACATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCAGATAACCGAGTATGCATTGCTGAGGCAGGAGCAATACCACCTCTTGTAGACTTGTTGTCTTCTTCAGATCCTCGAACTCAGGAGCACGCTGTTACTGCACTTCTCAATCTTTCGATCAATGACAGTAACAAAGGGACCATAGTAAATGCCGGAGCCATACCAGATATTGTAGATGTACTGAAAAATGGAAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTCAGTTTATCTGTTCTAGACGAGAACAAGGTGCAAATAGGTGCTGCCGGAGCTATTCCTGCTCTTATAAAGTTACTTTGTGAAGGTACTCCTAGAGGTAAGAAGGATGCTGCTACTGCTATCTTTAATCTATCTATTTACCAGGGAAACAAAGCAAGAGCTATAAAAGCTGGTATAGTAGCCCCTCTGATACAATTTCTGAAGGATGCTGGGGGTGGCATGGTAGATGAAGCACTAGCTATATTGGCAATCCTTGTAAACCACCATGAAGGCAGGGTAGCGATCGGTCAGGCGGAGCCAATCCCTACTCTAGTTGAGGTTATACGAACCGGCTCTCCACGCAACCGCGAGAATGCTGTCGCTGTCTTGTGGTCGCTATGCACTGGAGATCCACTGCAATTAAAACTAGCAAAAGAACATGGTGCAGAAGCTGCACTGCAGGAGTTATTAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGTAGCATATTGGAACTCTTGCAACGAATGGAAGGGGATGATAACCTGCGAAATTCTTAG 1893 0.4348 MGGSESSKGVVMGRLVECVKEISGLPECQNFCKRVYGNLVRRVKLLSPLFEELKDSDESLSDEQLQSFESLLVALDSAKTLLKAVNQGSKLYQALQRNDTADKFQKVTEKIEAVLSEIPYNKLEISEEVREQIELVHAQFKRAKAQTEFVDIQLDLDMALAQKEKDPEPAILKRLSEKLHLKTINDLRKESTELHELLITNGEVGDSFEMITSLLSKLRDCVLKENPEVDTSECEKLSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCGPSSLSDCDRNAISALLYKLMSSDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAIKAGIVAPLIQFLKDAGGGMVDEALAILAILVNHHEGRVAIGQAEPIPTLVEVIRTGSPRNRENAVAVLWSLCTGDPLQLKLAKEHGAEAALQELLENGTDRAKRKAGSILELLQRMEGDDNLRNS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02002 630 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
Cca02g02002 630 Gene3D - 522 628 IPR011989 -
Cca02g02002 630 SUPERFAMILY ARM repeat 340 618 IPR016024 -
Cca02g02002 630 CDD RING-Ubox_PUB 250 292 IPR045210 -
Cca02g02002 630 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Cca02g02002 630 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Cca02g02002 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 319 IPR013083 -
Cca02g02002 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Cca02g02002 630 Gene3D - 11 120 IPR036537 GO:0007166
Cca02g02002 630 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Cca02g02002 630 Pfam U-box domain 246 316 IPR003613 GO:0004842|GO:0016567
Cca02g02002 630 ProSiteProfiles cAMP/cGMP binding motif profile. 171 213 IPR000595 -
Cca02g02002 630 PANTHER U BOX DOMAIN-CONTAINING 12 622 - -
Cca02g02002 630 SMART arm_5 374 414 IPR000225 GO:0005515
Cca02g02002 630 SMART arm_5 538 578 IPR000225 GO:0005515
Cca02g02002 630 SMART arm_5 415 455 IPR000225 GO:0005515
Cca02g02002 630 SMART arm_5 456 496 IPR000225 GO:0005515
Cca02g02002 630 SMART arm_5 497 537 IPR000225 GO:0005515
Cca02g02002 630 SUPERFAMILY RING/U-box 245 321 - -
Cca02g02002 630 Gene3D - 424 521 IPR011989 -
Cca02g02002 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Cca02g02002 630 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 12 622 - -
Cca02g02002 630 Gene3D - 338 423 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02002 Cca-Chr2 39774184 39778153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02002 11 623 U-box Gene Family AT3G54850 66.775 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02002 - - gmx:100777452 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02002 02 39774184 39778153 Cca02g02002 02 39774184 39778153 ECH