Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01988 ATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTGAAGCAGAAGAGTACAAAAGAGCCAAAAAGAAAGGTTTATCTTTGTCCCGAGCCCACCTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATACGCTGTTCAATCTGATTGGAAGGCACATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCTCTAGCACAAGAGAGTGCAAGATACCCCAGTGGCTTAAACCCTTTGGGGACTCATTTGTTTTCCACAAACCACACTAGTTTAAGCCTATCCCAAGTGGGTTCCCAACTTTCCCAAGGTCAAAACCAGAACCAAACAGCCACGAACAGCATTTTGCGCCTTGGTGCAGCAACAAAGTTTGAGCACTTTATCCCTTCTCTAAACCACTCTTCATTTGGACACTCGCCACAATCAATGCCTACTTCCTCACCTTTCTTCATGAATGACAACACAAATCATGCATTTGAAGAACACCAACCACATCATAATGAACCATTCTCAAGCAAGCAACTACATGGCCTAATGCAATTCCCTGATCTTCAAGGcaacaacaacaacaacaacTCCGATTCTTCATCAGTAGCTGCTCCTTCCAATCTTTTCAACCTCAGTTTCTTCCCAAGTAGCAATAGCACCACCATAATCCCTGATCAATTCAACAACATAAGTGGAAGTGACCAAGGaacaacaacaacaacaccaCTCTATGTTAATAACAACCAAGCAGTAAGTGATCATGTTGGTTCGAGTTTTTCTTCACTCTTTGACAATTCAATAGAAAACGTGTCATCGCCTCTTATGTCTGCCACTGCGATGCTTCAAAAAGCTGCTCAAATGGGTTCAACCACAACCACCAACAATGGTTCTTCTTTACTTAGGGGAATTTGTAGCTCCTCAAATAGCAATGGTTCCAAAGCTGAAAATGAACACCACCACAATCTTCATGGGTTGATGAACTCTAATATTTCCAACGGACACACGTCCTTGTTTGGGAACATGCAAGGGAACGAAAGCAACCTTTATGGTTTTCACAATGTGGATGAGTCCAATAATAAGTTGCACCATAGTCTCAATGTAAACTTTGGAGATTCTGATAAGTTGACCTTAGACTTTTTGGGCGTAGGAGGAATGGTGAGAAACATGAGTGGTGGATTTTCACAAAGAGAACAGCAACAACAGCAACAGCGTGTCATGAGTTATTTGGACCCTGACCTAAAGTCACCGCAGTCAAATCTTCATTTTGGAAAGTCAACGCTGCTATAA 1476 0.4214 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARYPSGLNPLGTHLFSTNHTSLSLSQVGSQLSQGQNQNQTATNSILRLGAATKFEHFIPSLNHSSFGHSPQSMPTSSPFFMNDNTNHAFEEHQPHHNEPFSSKQLHGLMQFPDLQGNNNNNNSDSSSVAAPSNLFNLSFFPSSNSTTIIPDQFNNISGSDQGTTTTTPLYVNNNQAVSDHVGSSFSSLFDNSIENVSSPLMSATAMLQKAAQMGSTTTTNNGSSLLRGICSSSNSNGSKAENEHHHNLHGLMNSNISNGHTSLFGNMQGNESNLYGFHNVDESNNKLHHSLNVNFGDSDKLTLDFLGVGGMVRNMSGGFSQREQQQQQQRVMSYLDPDLKSPQSNLHFGKSTLL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01988 491 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Cca02g01988 491 SMART c2h2final6 6 28 IPR013087 -
Cca02g01988 491 SMART c2h2final6 82 102 IPR013087 -
Cca02g01988 491 SMART c2h2final6 47 77 IPR013087 -
Cca02g01988 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Cca02g01988 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 462 - -
Cca02g01988 491 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Cca02g01988 491 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 462 - -
Cca02g01988 491 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Cca02g01988 491 MobiDBLite consensus disorder prediction 219 239 - -
Cca02g01988 491 Gene3D Classic Zinc Finger 60 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01988 Cca-Chr2 39608468 39613080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01988 1 487 C2H2 Transcription Factor Family AT2G02080 44.894 1.49e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01988 zf-C2H2_jaz 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01988 K25870 - gmx:100780268 703.745