Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01987 ATGGGAAGAAAGGCCAATTGTGCCAATCACGATGTTGTGAACAGAGGTCCTTGGTCTGCTGAAGAAGACAAAATTCTTATGAACTACGTTCAAGTCCATGGCGAAGGAAAATGGAGAGAGCTTTCCAAAAGAGCTGGCTTGAAAAGATGTGGGAAGAGTTGCAGACTGCGATGGTTGAATTATCTTAAACCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTTATTATCAGACTACATAAGCTCTTAGGAAATAGATGGTCTCTGATAGCGGGACGTTTACCAGGGCGAACAGACAATGAAATTAAGAACTATTGGAATACTTATTTGAGAAAGAAGGTGGAGCAGAATCATAATCCTCACAAAATTCGTGACCATGATGAATCTCCGGGGTGCTCAAAAACCTCCTTGGGAGATCTTGATCCTGCAAAATCCTCACACCCAATGATGATTAAACCTAAATCAATGAGATGTACCAAGGTTATGATGCCAACTCGAGAAGTCAACGATTCAGTCAACGCAATGAATTTGATCACAACGAGCTGGGACAATCAGAACCCTTCTACGTCCATGCCACAAGACCATGTGCATAATCATTGCTTAACGGATGTTCTCCAAGACTTCGACATCAATGACGTGTTAATGTCGTATGAAGATGATGATTGTCGTTTTAATGGATATGCTTGTGTGGAAGTACCCCAACATATTTTTGAAGATGAAACTTGGAGGCTTGATGATTCCATGGGTGATCATGGAGCATGGTATGAGAATTGGAAGGTTGATACCTATTTTCCACAAGAACAAGACATGGGTTTTTATTCATTTTAA 837 0.405 MGRKANCANHDVVNRGPWSAEEDKILMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEQNHNPHKIRDHDESPGCSKTSLGDLDPAKSSHPMMIKPKSMRCTKVMMPTREVNDSVNAMNLITTSWDNQNPSTSMPQDHVHNHCLTDVLQDFDINDVLMSYEDDDCRFNGYACVEVPQHIFEDETWRLDDSMGDHGAWYENWKVDTYFPQEQDMGFYSF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01987 278 MobiDBLite consensus disorder prediction 121 135 - -
Cca02g01987 278 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Cca02g01987 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca02g01987 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Cca02g01987 278 CDD SANT 72 113 IPR001005 -
Cca02g01987 278 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Cca02g01987 278 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Cca02g01987 278 SMART sant 14 64 IPR001005 -
Cca02g01987 278 SMART sant 67 115 IPR001005 -
Cca02g01987 278 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 277 - -
Cca02g01987 278 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 277 - -
Cca02g01987 278 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca02g01987 278 Gene3D - 71 138 - -
Cca02g01987 278 MobiDBLite consensus disorder prediction 121 152 - -
Cca02g01987 278 CDD SANT 17 62 IPR001005 -
Cca02g01987 278 Gene3D - 15 67 - -
Cca02g01987 278 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01987 Cca-Chr2 39595001 39597579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01987 7 150 MYB Transcription Factor Family AT3G13540 58.940 1.97e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01987 Myb_DNA-binding 9.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01987 K09422 - gmx:100794570 441.425