Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01986 ATGACTGAAGAAAGTGCTGGAAACACAGTTGCAACCTCCATTACCCCATTAAACTGGTGGTATCTTCAGGCAAATTCTCTTTCTTCCTGGAACGAGACTAATAACACATGGAACAACCAACCAAACCCTAATTCTTCCTCTTCTTGTGAGGAGGATATATCTGTTTCTACATCTTTCACTAATGCTTCCAACCATTCAAGCCTCACTGTTGAGTCCTCTCGCAGACTCATTGAGCCACCTGCTCCTTCCTCCAACGAGTTGATGGGAGAACATCATGCTTCGGATAATCAACTTTGGAGTCACGTTCTATCGGGTGTTGGATCAAACGGTGAGTTGCACAACAGCCAAGAAATTGGAGAGAACTTTCTGGATGCACTATCATCAAAAAGCATGACAAGCACCATGTGTCAACCAGTCTGTGACTACTTGAAGAAACTTGATACCAGTTGGGATTATAGTGGTTCAACTTCATTAAATAGCTTTGAGAAGCACTTAAATGGGTTCAGTGAGGCAATGATTGAGAATAATGAAAGGTTGACAAAGTTATCTAATCTTGTGAGCACTTGGTCTATTGCCCCACCAGACCCAGAAGTTAGTAGCCACTTTGATCCACAAACAAACAACATGTCCTTGAGTTCTTCCATGGAGCACTTCCCACAATCTGATCACTTCAAGCAACCTTTTGTAGACTCCACATCATGCTCGCTTGGAGGAGCAACTAGAAATTCAGGAGTGTTCCCATGCTATGATCATGACATGAAGGTCAAACAAGAGTATCATCATCATGCAAGTGAAGTGCCAGGATCAGCTGGTTTTGGAAGACCATTAAATGCAAATGGATATCAAAATGGATTTAATAACCTTTCAGCTGGAGATAGTTGCAAACTCTACCAAGGGTTGCCTAATCTTTCTTCATGCACAAGAAATTTCTCTGATGTTATATCCTTTGATAGTCGACTAGGAAGGCCAGTTATTGGAATCCATTCACAGAAGCCTAGTATGAAGTACCTGAATAACGTATCTGAATCAAAGAAGCAGGGTCTTCAGGCACCATCACCGATAAGAACTAATATTAATGGAAAAGGAGAGGGGACAACACGTGAAGTAAAGAAGAAAAGATCTGAAGAATCTTCAGATGCAATGTTGAAAAAGCCTAAGCAAGATGCATCAACTGCTTCTTCTTCAAAGGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACCGATACAGCATCTGTGCTGTTTGAAGCAATAGGCTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTGAGCAACCCTTACTTGAAGGCTAATTCTCACAAGGATCCATGGGGAAGCTTGGATAGAAAAGATAAGGAGGAGACAAAGGTAGACCTTCGTAGCAGAGGTCTTTGTTTAGTTCCTACTTCATGTACTCCTCTAGTTTACAGAGAGAGCAGTGGACCAGATTACTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA 1530 0.4196 MTEESAGNTVATSITPLNWWYLQANSLSSWNETNNTWNNQPNPNSSSSCEEDISVSTSFTNASNHSSLTVESSRRLIEPPAPSSNELMGEHHASDNQLWSHVLSGVGSNGELHNSQEIGENFLDALSSKSMTSTMCQPVCDYLKKLDTSWDYSGSTSLNSFEKHLNGFSEAMIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNMSLSSSMEHFPQSDHFKQPFVDSTSCSLGGATRNSGVFPCYDHDMKVKQEYHHHASEVPGSAGFGRPLNANGYQNGFNNLSAGDSCKLYQGLPNLSSCTRNFSDVISFDSRLGRPVIGIHSQKPSMKYLNNVSESKKQGLQAPSPIRTNINGKGEGTTREVKKKRSEESSDAMLKKPKQDASTASSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKANSHKDPWGSLDRKDKEETKVDLRSRGLCLVPTSCTPLVYRESSGPDYWTPAYRGCLYR 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01986 509 MobiDBLite consensus disorder prediction 33 73 - -
Cca02g01986 509 MobiDBLite consensus disorder prediction 341 363 - -
Cca02g01986 509 MobiDBLite consensus disorder prediction 364 383 - -
Cca02g01986 509 CDD bHLH_AtbHLH_like 403 445 IPR045239 -
Cca02g01986 509 Gene3D - 400 456 IPR036638 GO:0046983
Cca02g01986 509 MobiDBLite consensus disorder prediction 33 90 - -
Cca02g01986 509 PANTHER TRANSCRIPTION FACTOR BHLH111 31 495 - -
Cca02g01986 509 MobiDBLite consensus disorder prediction 341 398 - -
Cca02g01986 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 403 453 IPR036638 GO:0046983
Cca02g01986 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 388 437 IPR011598 GO:0046983
Cca02g01986 509 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01986 Cca-Chr2 39563862 39567153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01986 23 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.267 3.97e-48 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01986 - - gmx:100527800 879.782