Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01985 ATGGCGAGGATCAAACCTCAGGCTCTGCTGCAGCAAAGTAAAAGGAAGAAGGGTCCTTCTCGCATAAGTGCCACGACTATCATAttttactttttgattcttgccttgattggctttttcctttttgcttCGTACAGACATTGGTCCAGCAGGTCAAGGTTGCAGTCTGAAAATCACTTGTCAGTTTCCCAGGGCGAAAATACTTTTGGAGGGGAGTCAAAGAAATCTGATCTGCCTGGATATGCTGTCTTAAATACCTCTAAAGGTTCTATAATAATAAAACTGTACAAGGAAAGTGCTCCTGAAGTTGTTGACGAATTCATTGACTTATGTCAAAAAGGGCATTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGAACTGGAGCTGCTGAAGATTGGAACTTGAGAGGAAAGCAACATACTATTTCTAGTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAAGGCAAACACAACAACAAAGGATTTGATCTTTTCATAACTACTGCACCGATACCAGATCTAAATGAGAAACTTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACAAACCTAAAATATCTATTGGGATACTGGATGTGACTCTTAAACAGAAGGTCTGA 702 0.3789 MARIKPQALLQQSKRKKGPSRISATTIIFYFLILALIGFFLFASYRHWSSRSRLQSENHLSVSQGENTFGGESKKSDLPGYAVLNTSKGSIIIKLYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGDNQGTGAAEDWNLRGKQHTISSMKHEAFMLGTSKGKHNNKGFDLFITTAPIPDLNEKLIVFGQVIKGEDVVQEIEEVDTDEHYKPKISIGILDVTLKQKV 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01985 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 233 - -
Cca02g01985 233 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 227 IPR002130 GO:0000413|GO:0003755
Cca02g01985 233 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 78 229 IPR002130 GO:0000413|GO:0003755
Cca02g01985 233 SUPERFAMILY Cyclophilin-like 79 229 IPR029000 -
Cca02g01985 233 CDD cyclophilin 83 226 - -
Cca02g01985 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 110 IPR002130 GO:0000413|GO:0003755
Cca02g01985 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Cca02g01985 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 176 188 IPR002130 GO:0000413|GO:0003755
Cca02g01985 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Cca02g01985 233 Gene3D - 68 233 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01985 Cca-Chr2 39544828 39550086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01985 80 229 U-box Gene Family AT5G67530 31.169 2.35e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01985 - - ccaj:109810600 446.817