Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01981 ATGATGCCCCCTGAGCAAGAAACCACTAATATTGCACCAAACATTCCAGCCATCACAACCCGATCCGAGTCCAGCTCGGTCCACCACGAACCAGAGGGTTCTAACACTAACAAAATCAAACCAAGTTTGGATGATAATGGCAATATTCCTGCACAGCATCAGACTCAGCCAACAACACCTCCACCACCAAGATTTTCCGTCCTTCACCAAGCCTTGCGTCCCATTACCCTCAAATTTGAAGACGTATCCTACAGCATAACCTTCGAAAGCCAAAAGAACAAGGGTTGCGTCTTACGTAAAGAGTCAAAGCTAAGAAGAAAGGTGCTAACCGGCGTTACCGGAGTAGCGAACCCCGGCGAGTTAACGGCAATGCTGGGCCCCTCCGGGAGCGGGAAGACGACCCTCCTAACCGCCTTAGCGGGGAGGCTCGCCGGGAAAGTCTCCGGCACCATAACCTACAACGGCCGCACCGACGCCACCTTGGTGAAGCGAAAAGTAGGGTTCGTAACGCAAGACGACGTTCTCTACCCTCACCTCACGGTGCTCGAGACCCTCACCTACGCGGCGTTGCTGAGGCTTCCGAAGAGCTTAAGCAGAGAGGAGAAGGTGGAGCACGCCGAGATGGTGCTGGCGGAGCTCGGCCTCACGCGGTGCCGCAACAGCCCCGTCGGAGGCTGCATGGCGCTTTTCCGGGGCATTTCGGGTGGGGAACGGAAACGGGTCAGTATCGGGCAGGAGATGTTGGTCAACCCGAGTTTGTTGTTCGTGGATGAGCCCACTTCGGGCTTGGACTCCACCACGGCCCAACTCATCGTGTCGGTGCTCCGTGGGCTCGCTCGGGCGGGTCGGACCGTGGTTACCACTATCCACCAGCCGTCCAGCCGCTTGTATAGAATGTTTGATAAGGTGATTGTCTTGTCTGACGGGTACCCGATTTATAGTGGCCATGCGGGTCGGGTCATGGACTATCTCGGATCCGTTGGGTTTGTCCCAGCTTTCAATTTCATGAACCCGGCAGATTTCCTACTTGACCTTGCTAATGGCATTGTTGCTGATGTCAAACATGATGATCAGATTGACCACCATGAGGATCAAGCTTCAGTCAAACAATCTTTAATTTCATCCTTTAAGAAGAACTTATATCCTGCTCTTAAAGAAGACATTCAGCAAAATAACAGTGACCTGCAGGCTTTTACATCAGGAACAACTAGACGCTCTGATAACCAATGGACCACCAGCTGGTGGGAGCAATTCAAGGTGCTTCTTAAGAGGGGTTTACAAGAGAGGAGGCATGAATCTTTTTCTGGCTTAAGAATTTTCCAAGTCTTGTCTGTATCGATTCTCTCAGGACTTCTGTGGTGGCACTCTGATCCTTCACATGTACAAGATCAGGTTGGACTCCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTCAATGCCATCTTTGCATTCCCTCTGGAAAGGCCAATGCTAATAAAAGAAAGATCATCAGGGATGTATCAACTCTCTTCATACTATGTTGCAAGGATGGTGGGGGACTTACCAATGGAGCTAGTGCTTCCTACTATCTTTGTAACAATATCCTACTGGATGGGAGGTCTCAAGCCTTCATTGGTTACATTTGTGTTAACCCTCTTGATCATGCTTTTTAATGTGCTGGTCTCTCAAGGCATAGGCCTAGCACTTGGGGCCATTCTCATGGATGTGAAGCAGGCCACAACTCTAGCTTCAGTGACCATGTTGGTGTTTCTCTTGGCTGGTGGTTACTACATTCAGCAAATTCCTGCTTTTATAGCTTGGTTGAAGTACATCTCTTTTAGTCACTACTGCTATAAGCTACTGGTAGGAGTTCAGTATTCAGCAAATGAGGTATATGAGTGTGGACCAGGGTTGCATTGTAGGGTAAGAGATTTTCCTGCCATAAAGTGTTTGGGGCTTGATGGTAACATGTGGGGAGATGTGGCTGCATTGTCTATAATGTTGATTGGATATAGAGTTGTGGCATATCTAGCTTTGAGGATGGGGCAGCCTCACTGA 2046 0.4946 MMPPEQETTNIAPNIPAITTRSESSSVHHEPEGSNTNKIKPSLDDNGNIPAQHQTQPTTPPPPRFSVLHQALRPITLKFEDVSYSITFESQKNKGCVLRKESKLRRKVLTGVTGVANPGELTAMLGPSGSGKTTLLTALAGRLAGKVSGTITYNGRTDATLVKRKVGFVTQDDVLYPHLTVLETLTYAALLRLPKSLSREEKVEHAEMVLAELGLTRCRNSPVGGCMALFRGISGGERKRVSIGQEMLVNPSLLFVDEPTSGLDSTTAQLIVSVLRGLARAGRTVVTTIHQPSSRLYRMFDKVIVLSDGYPIYSGHAGRVMDYLGSVGFVPAFNFMNPADFLLDLANGIVADVKHDDQIDHHEDQASVKQSLISSFKKNLYPALKEDIQQNNSDLQAFTSGTTRRSDNQWTTSWWEQFKVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDPSHVQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYQLSSYYVARMVGDLPMELVLPTIFVTISYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQIPAFIAWLKYISFSHYCYKLLVGVQYSANEVYECGPGLHCRVRDFPAIKCLGLDGNMWGDVAALSIMLIGYRVVAYLALRMGQPH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01981 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 326 IPR027417 -
Cca02g01981 681 CDD ABCG_EPDR 74 315 - -
Cca02g01981 681 Gene3D - 88 326 IPR027417 -
Cca02g01981 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 49 678 - -
Cca02g01981 681 Pfam ABC-2 type transporter 290 353 IPR043926 GO:0140359
Cca02g01981 681 ProSitePatterns ABC transporters family signature. 233 247 IPR017871 GO:0005524
Cca02g01981 681 Pfam ABC transporter 112 261 IPR003439 GO:0005524
Cca02g01981 681 MobiDBLite consensus disorder prediction 1 63 - -
Cca02g01981 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 49 678 - -
Cca02g01981 681 SMART AAA_5 118 311 IPR003593 -
Cca02g01981 681 MobiDBLite consensus disorder prediction 7 54 - -
Cca02g01981 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 77 333 IPR003439 GO:0005524
Cca02g01981 681 Pfam ABC-2 type transporter 416 622 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01981 Cca-Chr2 39504768 39509705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01981 107 309 Calmodulin-binding Proteins AT2G36910 30.332 4.11e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01981 K05681 - gmx:100792991 1238.02