Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01971 ATGATACAGGAAGATCAAGGTCAGTGTTCTTCTCAAGCGATCAATAACTACCACCAGGCCTATCAAGAGCATCTTCTCCTTCAGCAGCAACAGATGCAGCAACAAAACAACGATATCTATGGTGGAGGGTTGAACATGTACCATGGTGAAGTTTCTCCAATCTTGCATCAACCATGGTCTATGCCTCATCAAGTGGTTCACCACCATCACCCCCTCAACCCTGTGAGAGAGCATGACCCTTTTCTTGTCCCTCCCCAACCCTCACCCTATGCAACTTTGTTCAACAGAAGGGGTCCCTCTCTTCAGTTTGCATATGATGGTTCATCTTCTGACCATCTTAGGATCATATCTGATACCCTTGGACCGGTGGTTCAACCCGGTCAAGCACCCTTTGGCCTCCAAACCGAGCTGGCTAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCCCTTGCTGCATCCAAGAGTCACAGTGAAGCTGAGAGGAGACGCAGAGAGAGAATCAATAACCACCTTGCCAAGCTTCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCGGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACATCATTGATAGCAGAATCGAGTCCAGTTCCTACGGAGTCTGATGAGTTAACAGTAGAGGATGAAGCTGATGAAGATGGAAACTCAGTGATCAAAGCCTCGTTGTGCTGTGAAGATAGGTCAGATCTGTTTCCTGAACTCATAAAGACATTGAAAGCATTGAGGCTAAGAACCCTTAAAGCTGAGATCACAACGCTTGGTGGGCGTGTGAAGAACGTGTTGTTCATAACTGGGGAAGAAGCAGACTCAAGCAGTGGCAGCGAGGACCATAGCCACCAACAACAGTACTGCATTAGCTCAATCCAAGAAGCGCTTAAGGCAGTGATGGAGAAGAGCGTTGGGGATGAGTCTGCTTCTGCAAATATTAAGAGACAAAGGACCAACATAATATCAATGTCCTAG 1014 0.4694 MIQEDQGQCSSQAINNYHQAYQEHLLLQQQQMQQQNNDIYGGGLNMYHGEVSPILHQPWSMPHQVVHHHHPLNPVREHDPFLVPPQPSPYATLFNRRGPSLQFAYDGSSSDHLRIISDTLGPVVQPGQAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTESDELTVEDEADEDGNSVIKASLCCEDRSDLFPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEADSSSGSEDHSHQQQYCISSIQEALKAVMEKSVGDESASANIKRQRTNIISMS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01971 337 Pfam Helix-loop-helix DNA-binding domain 155 201 IPR011598 GO:0046983
Cca02g01971 337 PANTHER TRANSCRIPTION FACTOR BHLH30 69 335 IPR045847 GO:0003700|GO:0006355
Cca02g01971 337 Gene3D - 147 208 IPR036638 GO:0046983
Cca02g01971 337 CDD ACT_UUR-ACR-like 238 313 - -
Cca02g01971 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 208 IPR036638 GO:0046983
Cca02g01971 337 SMART finulus 158 207 IPR011598 GO:0046983
Cca02g01971 337 CDD bHLH_AtAIG1_like 147 223 - -
Cca02g01971 337 PANTHER TRANSCRIPTION FACTOR BHLH30 69 335 - -
Cca02g01971 337 MobiDBLite consensus disorder prediction 209 228 - -
Cca02g01971 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01971 Cca-Chr2 39361391 39363815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01971 10 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.410 3.93e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g01971 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01971 - - pvu:PHAVU_007G101900g 567.77