Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01970 ATGCTGGTTCGGAGAAGGGTGATGAGTTGGAGAAGGGTGGCCAAGGCTCTCATAGCTCTGCTAGCTCATGCCTTGCTTTTCTCCTTCACTATTCTCCTTGCTCTCAAGCTTGACGCTCTCTTTCATCATTCATGGTGGAAGGTATTTGTTCCTCTATGGTTTTTTCATGCTGTGGTATCAAGAGGCAGATTTTCCTTGCCTGCTCCTTCATTGCCTCATGATCGCCGATGGGCTCCTTGTCATTCGGTCGTAGCAACTCCACTACTTGTTGCATTTGAGCTGCTTCTTTGTATACATCTCGGGAGCACTTATGGGATGAATTTAAGGATTGTCTTCCTGCCCCTCATAGCTTTAGAATTCGTGATTTTGTTTGATAACATCAGGATGTGTAGGGCTTTGATGCCTGGAGACGATGAAAATTTGACAGATGAAGCAGTATGGGAAACTCTTCCGCACTTCTGGATTTCAATATCCATGGTCTTCTTTATTGCTGCAACAGTGTTCACCCTTCTAAAGATATGTGGCGATGTTGCTGCTCTAGGCTGGTGGGACTTATTTATTAACTTCGGCATTGCACAGTGCTTTGCGTTTCTTGTTTGTACAAAGTGGCACAATCCAACTATTCATGGGGGCTGTCACATTACAGAACCGTGTTCATCATCAAATTCCATAAGATATCTTGACTTGAGTAGAGAAGGCTTAGTTATTTACGCAGATGAAGATAGCCAGCAAAATGGGTTCTGCAATCTGCAGGATGTTGGTGGGCATATTATGAAAATCCCATTCATTGGTTTCCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCCGGTGCAAAAAATATGCCGCATTGGGTCATTTTTTCCCCCCTATTTTTGTTGCAAGGAGCTGGAGTTTTATTTGCAGCATATAGATTAATAGAGAAGATAGTTCTTTTACTCTATAGTGGAGATATTCCTGAAAGATACTCAGCTATAGCATCAAAATCCCATGAGTGCTTTGGGTTCTTTCAACGTGGGTCAAGGTTGCTTGGTTGGTGGTGTATAGATGAAGGGAGTAAAGAGGAAGAAGCTAGACTTTTTTGTGCTGAGAGTTCTGGGTATAATACTTTTACCCCTGACACGGTGAAGAAAATGCCTAGAACAGATCTGGTTGAGGAGATATGGAGACTACAAGCTGCCCTGGGTGAGCAAACACAAGTTACAAAGCTTAGCCAGGATGAGTATGAAAGACTTCAAAATGAAAAGATCTTATGTAGAATTTGCTTCGAACAGCAGATTAACGTGGTCCTTCTTCCCTGCAGACATCACGTTCTTTGCAGCACTTGCTGCGAAAAATGTAAAAAGTGCCCTATCTGTCGTGGCCCCATTGAAGAAAGGATGCCTGTATATGATGTGTAG 1404 0.4266 MLVRRRVMSWRRVAKALIALLAHALLFSFTILLALKLDALFHHSWWKVFVPLWFFHAVVSRGRFSLPAPSLPHDRRWAPCHSVVATPLLVAFELLLCIHLGSTYGMNLRIVFLPLIALEFVILFDNIRMCRALMPGDDENLTDEAVWETLPHFWISISMVFFIAATVFTLLKICGDVAALGWWDLFINFGIAQCFAFLVCTKWHNPTIHGGCHITEPCSSSNSIRYLDLSREGLVIYADEDSQQNGFCNLQDVGGHIMKIPFIGFQILLFMHLEGTPSGAKNMPHWVIFSPLFLLQGAGVLFAAYRLIEKIVLLLYSGDIPERYSAIASKSHECFGFFQRGSRLLGWWCIDEGSKEEEARLFCAESSGYNTFTPDTVKKMPRTDLVEEIWRLQAALGEQTQVTKLSQDEYERLQNEKILCRICFEQQINVVLLPCRHHVLCSTCCEKCKKCPICRGPIEERMPVYDV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01970 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
Cca02g01970 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
Cca02g01970 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
Cca02g01970 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
Cca02g01970 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Cca02g01970 467 SUPERFAMILY RING/U-box 411 463 - -
Cca02g01970 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 466 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01970 Cca-Chr2 39342627 39350999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01970 8 467 C3H Transcription Factor Family AT1G73950 61.966 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01970 - - gmx:113000756 875.544