Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01969 ATGACAATGGCTGGAACATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAATGAGTGCTTCCGGCTCATGTGGAAAAGTTATATGGAAAAGCAATCCCGCGAGAGCTTGCCCAAATTGTGAACATGTTATTGACAACAGTGATGTAGCACAGGAGTGGCCTGGACTACCTAAAGGCGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTGGTGCAGGAAACTCAAGACCGCACCCCTTCATTGATGAATTTATTACTACTCTTGAAGCGGATGGGGGGATTTGTTATACTCATCCTCAACATTTACCAGGTGTCAAGCAAGATGGAAATGCTTCCCATTTTTTCCATCGAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAAATATGTGATCAGGATTTTGGTGACGTCCGCTGGCACAAGACTGGAAGGACTAAACCTGTCATCTTCAACGGGGTTCAAAAAGGCTGCAAAAAGATTATGGTCCTGTATGTAAGCCTGGTGAGAGGAGGAAAATCTGAAAAAACTAATTGGGTCATGCATCAATATCATCTAGGAACACAAGAGGATGAAAAGGATGGAGAGTATGTTATCTCTAAAGTTTTTTATCAGCAGCTGCAAGTCAAATTTGGTGAAAACGATGACCAGGATATTCCTGAAATTACTGAAGCAACTTTATTGAAAGTGGATCCAGTCACTCCCAAGTCTGTGACTCCTGAACCTCCTCGTATTGAAAAGCAATGTTCAAATCTAGACCTAAAACTAAAAGAAGAATCACGTCATATTCCTCAGCATCCTCAGATGGATTGTATAGATGACCTTCAGGCTGATTGTGAAGATCTTGCAAAAGATGATCTATTGGTGGTAGACACTCAAAATAATAAAGGGATAGATAATATAGAAAACAATGCTGAGGAAGACTCAAAATGGTGGGATAGTGAGTCGCAGAATCTGTTGAGTTCACAACAACTTGTGGAAGCATTGTTCTTGTGTGATGATCTCCTTCAAAGCCAGTCTCCCAGCAGGGATGGGGAAAATGAACACAAGAAACGACCCAGTCTTTCTGTTTATGCTCATCTAGGACCGGAGCATCTGAAGAAAGATATTGAAGAGTGCCAAAATCTTGTCCTTGACACTACAAATGTAGAGCCTGAGACAGTGCCATCAGAATTGCGACTAAGTCAGCTGGATTTCAGTACACAAGATAGTTTTATTTCCTGGGGTGACTGCAAAGCAATTGACTAA 1281 0.4122 MTMAGTSWLVDKSRIATKIMSASGSCGKVIWKSNPARACPNCEHVIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGAGNSRPHPFIDEFITTLEADGGICYTHPQHLPGVKQDGNASHFFHRAIKAYNTGSRKRRKICDQDFGDVRWHKTGRTKPVIFNGVQKGCKKIMVLYVSLVRGGKSEKTNWVMHQYHLGTQEDEKDGEYVISKVFYQQLQVKFGENDDQDIPEITEATLLKVDPVTPKSVTPEPPRIEKQCSNLDLKLKEESRHIPQHPQMDCIDDLQADCEDLAKDDLLVVDTQNNKGIDNIENNAEEDSKWWDSESQNLLSSQQLVEALFLCDDLLQSQSPSRDGENEHKKRPSLSVYAHLGPEHLKKDIEECQNLVLDTTNVEPETVPSELRLSQLDFSTQDSFISWGDCKAID 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01969 426 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Cca02g01969 426 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 3 420 - -
Cca02g01969 426 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 420 IPR044799 GO:0003700
Cca02g01969 426 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Cca02g01969 426 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Cca02g01969 426 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01969 Cca-Chr2 39317824 39323729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01969 30 216 NAC Transcription Factor Family AT1G28470 56.477 4.93e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca02g01969 NAM 1.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01969 - - gmx:100787702 763.451