Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01965 ATGGATGGAGCCACTTCCACAGACGAAACCACCACAACCGCCGATTCTCTCTCGCTTCCGCAGCCGCCCAACACGCTAAGCCGCCTCGCCCCCGACGCCGGATCCGCCGAAGCGGAATCCCGGAAACTGCCGTCGTCCAAATACAAAGGCGTGGTGCCGCAACCGAACGGTCGCTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACGTCGCCGCGCAGCGCTTCCGCGGCCGCGACGCCGTCACGAACTTCAAGCCTCTCGCCGCCGACGACGCCGAGACCGACTTCCTCAACTCGCATTCCAAGGCCGAGATCGTCGACATGCTCCGCAAGCACACCTACCACGACGAGCTCCACCAGAGCAGGCGCGGCACCAGCGCCGCCTGGAGGCGCCGCCGCGACGGCGAGATGGCCTCGAGCGGCGCGTGCGAGGCCAAGGCGCGTGAGCAGCTGTTCGAGAAAACCGTCACGCCGAGCGACGTCGGGAAGCTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTGGGCGGCTCCGGCGACGGAGTGTTGGCGTGCACGGCGGCGGCGAAGGGAGTGCTTTTGAACTTCGAGGACGTTGGAGGAAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAGAGCTACGTGCTTACTAAAGGATGGAGCCGGTTCGTCAAGGAGAAGAATCTCAGAGCCGGTGATGCGGTTCGGTTTTTTAAATCCACCGGTCCGGACCGCCAGCTTTATATAGATTGCAAGGCCCGGACTGGAGACACTAATGCCAGCGCTTTGTTTATTCCGGTTGGACCGGTGGTTGAGCCCGTTCAGATGGTTCGGCTTTTCGGAGTCAACCTTTTGACACTCCCCGTTTCGGAAGGTGTTAATGGTTATGGGAAGCGGAAAGAGATGGAATTGTTTGCATTAGAATGTAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1035 0.5952 MDGATSTDETTTTADSLSLPQPPNTLSRLAPDAGSAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAADDAETDFLNSHSKAEIVDMLRKHTYHDELHQSRRGTSAAWRRRRDGEMASSGACEAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLGGSGDGVLACTAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFKSTGPDRQLYIDCKARTGDTNASALFIPVGPVVEPVQMVRLFGVNLLTLPVSEGVNGYGKRKEMELFALECSKKLKVIGAL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01965 344 SMART B3_2 169 279 IPR003340 GO:0003677
Cca02g01965 344 SUPERFAMILY DNA-binding domain 46 102 IPR016177 GO:0003677
Cca02g01965 344 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g01965 344 CDD B3_DNA 168 274 IPR003340 GO:0003677
Cca02g01965 344 Pfam AP2 domain 46 94 IPR001471 GO:0003700|GO:0006355
Cca02g01965 344 ProSiteProfiles AP2/ERF domain profile. 47 102 IPR001471 GO:0003700|GO:0006355
Cca02g01965 344 Gene3D AP2/ERF domain 46 103 IPR036955 GO:0003700|GO:0006355
Cca02g01965 344 Pfam B3 DNA binding domain 169 263 IPR003340 GO:0003677
Cca02g01965 344 ProSiteProfiles B3 DNA-binding domain profile. 169 280 IPR003340 GO:0003677
Cca02g01965 344 Gene3D - 156 287 IPR015300 -
Cca02g01965 344 SMART rav1_2 47 108 IPR001471 GO:0003700|GO:0006355
Cca02g01965 344 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 344 - -
Cca02g01965 344 SUPERFAMILY DNA-binding pseudobarrel domain 167 276 IPR015300 -
Cca02g01965 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 344 IPR044800 GO:0003700
Cca02g01965 344 MobiDBLite consensus disorder prediction 1 54 - -
Cca02g01965 344 CDD AP2 46 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01965 Cca-Chr2 39272873 39274483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01965 5 344 B3 DNA Binding Superfamily AT1G25560 58.021 4.43e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Cca02g01965 B3 9e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01965 K09287 - gmx:732601 530.791