Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01964 ATGCAGAATACTCACTCTTACTCGTGCATATCCTCTTGTGGCAGTGATAGTGCCTGCTTAGAAGCTGATGAGGTTGACAATGAAGAGTCCATATCCCTCTCCCTTGGCCCTCCTAGCCAATCCAAATCCAAAGTACTCTCTAAGTATAACCCAAAACAGTCTTCTACTATGCATTATCAGCAGCAAAACCCTAGCTATGATGACTTGAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCCACCACCGCCACCAAACCTTCTTCCACTCCATTTCATGGTCGATATTGGATCCCTACTCCTCAACAAATCCTCATTGGCCCTACCCAGTTTTCTTGCACAGTCTGTAACAAAACGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGATCGGATTCATTGAGAGGGTCAAAAGCAGGTTCTTCAATGCTGAGGCTTCCCTGCTATTGCTGTGAGGAGGGTTGCAAAAACAACATAAACTATCCAAGATCAAGGCCACTGAAGGATTTCAGGACCCTCCAGACACACTACAAGAGGAAGCACGGAGGGAAGCCATTTGAATGCAGGAAGTGCCACAAGCCATTTGCAGTGCGAGGGGATTGGAGAACACATGAGAAGAATTGCGGGAAGCTTTGGTTCTGTGTTTGTGGTTCTGATTTCAAGCACAAGAGGTCCCTTAAAGATCATGTCCGTGCATTCGGCAGTGGCCATGCTCCACACAACTTGAGTGAAGAAAGAGGTAATGAAGGTGGAGATTATGAGGGTGAAGTTGTTTTTGTTGCTTTCAAATAA 822 0.4611 MQNTHSYSCISSCGSDSACLEADEVDNEESISLSLGPPSQSKSKVLSKYNPKQSSTMHYQQQNPSYDDLSGVTVALHIGLPTTATKPSSTPFHGRYWIPTPQQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGSDSLRGSKAGSSMLRLPCYCCEEGCKNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCHKPFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGSGHAPHNLSEERGNEGGDYEGEVVFVAFK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01964 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Cca02g01964 273 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Cca02g01964 273 SMART c2h2final6 196 216 IPR013087 -
Cca02g01964 273 SMART c2h2final6 159 191 IPR013087 -
Cca02g01964 273 SMART c2h2final6 111 133 IPR013087 -
Cca02g01964 273 PANTHER ZINC FINGER PROTEIN WIP6 1 256 - -
Cca02g01964 273 SUPERFAMILY beta-beta-alpha zinc fingers 181 216 IPR036236 -
Cca02g01964 273 Gene3D Classic Zinc Finger 135 221 - -
Cca02g01964 273 Gene3D Classic Zinc Finger 110 133 - -
Cca02g01964 273 SUPERFAMILY beta-beta-alpha zinc fingers 93 133 IPR036236 -
Cca02g01964 273 PANTHER ZINC FINGER PROTEIN WIP2 1 256 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01964 Cca-Chr2 39258930 39260794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01964 27 255 C2H2 Transcription Factor Family AT1G13290 67.227 4.60e-113 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01964 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01964 - - gmx:100784037 499.59