Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01963 ATGTATTTCTCTGACAAAATGCACCGCTTCAACATGGCCTTCTCTGACTACATCCAAGCATTGGAGGAAGAACGCCGTAAGGTTCAGGTCTTCTCCAAAGAGCTTCCTCTCTCCTTGGAACTGGTCACTCAAGCCATTGAAACTTGCAAACAGCAGTTGTCTGGCACCACGAGTGAGTATAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACAACATCAACGGGACCTGTTTTGGAGGAGTTTATTCCAATCAACAAGGAAAGGGCATCATCCCCTTGTTTTGATGAAGATGATGAACAGCATTCTAATAAGACAAGGGGTTCAAAGGAGAATAAGAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGCTGTGGAATCCAGATCCCCCAGCTGAGGAGGATGTGACTAGGAAGGTACCTGGGATTGAGTTGAAGAAAAGTGGAAGTGTTGGCGGTGCTTTTCAGCCATTCCACAAGGAAGAAAGAGCTGCCAAGACAAGTGAATCATTGAGTAAAGCAACCTCTCCGCCGGCGGCTGCTGAGAGCAGTAAAAGAGAGGAGAAAGAGGGACAGAGAAAGCAGCGCAGGTGCTGGTCTCAGGACTTGCACAAGCGTTTTGTGCATGCCCTTCAGCAACTTGGGGGTGCAGATTCTGCCACACCAAAGCAAATCAGAGAGCGAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTGCACACTAGAAGGCCAAGTCCTATAGTTCACAACAGTTCCAATCCACAAACAGCACCTTTTGTCCTTGTGGGGAACATTTTTGTTCAATCACCAGAATATGCAGCGGTAGCTAACTCAACAGCATCAAGGGAAGTGACCACAGTTGCAGCACCTGCTGGAATTTATGCACCAGTGGCCACACATCCTACACCTGTTTCTCACCCACCTGCTGATTCAATCAAGAAGCCACAGTTTAAGAAAGTGAAGCTGTTTGAACATTCAAATTCTGAAGAAGGGGCTAATCATAGTGAAGGAGCTGTTCATTCGAATTCTCCTACCTCATCCTCCTCCACACATACCTCTACTTCCCCTGGCTACTGA 1113 0.4645 MYFSDKMHRFNMAFSDYIQALEEERRKVQVFSKELPLSLELVTQAIETCKQQLSGTTSEYNLNGQSECSEQTTSTGPVLEEFIPINKERASSPCFDEDDEQHSNKTRGSKENKNSDKRKSDWLRSVQLWNPDPPAEEDVTRKVPGIELKKSGSVGGAFQPFHKEERAAKTSESLSKATSPPAAAESSKREEKEGQRKQRRCWSQDLHKRFVHALQQLGGADSATPKQIRERMNVDGLTNDEVKSHLQKYRLHTRRPSPIVHNSSNPQTAPFVLVGNIFVQSPEYAAVANSTASREVTTVAAPAGIYAPVATHPTPVSHPPADSIKKPQFKKVKLFEHSNSEEGANHSEGAVHSNSPTSSSSTHTSTSPGY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01963 370 MobiDBLite consensus disorder prediction 165 201 - -
Cca02g01963 370 MobiDBLite consensus disorder prediction 90 144 - -
Cca02g01963 370 MobiDBLite consensus disorder prediction 334 370 - -
Cca02g01963 370 MobiDBLite consensus disorder prediction 185 201 - -
Cca02g01963 370 Pfam Myb-like DNA-binding domain 199 250 IPR001005 -
Cca02g01963 370 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 368 - -
Cca02g01963 370 Gene3D - 196 254 - -
Cca02g01963 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 368 IPR044787 GO:0003700|GO:0006355
Cca02g01963 370 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Cca02g01963 370 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 252 IPR006447 GO:0003677
Cca02g01963 370 MobiDBLite consensus disorder prediction 344 370 - -
Cca02g01963 370 MobiDBLite consensus disorder prediction 91 123 - -
Cca02g01963 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 254 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01963 Cca-Chr2 39244785 39247621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01963 1 359 G2-like Transcription Factor Family AT1G68670 42.132 7.91e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca02g01963 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01963 - - gmx:100796683 578.941