Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01962 ATGGAACTTCTCTCTGTGTCTGTCACACTCGGCAAATGTCAAACATTTTCCTTTCCGAAACCGAAGACAACCCAAATTCATGAACTTCCAATAAACATAAGAATACCCAACAAAAGAAGTCACTCCAATCTTTCTTCTTCTTCTTGTTCCTGTAATTGGTCCATTACAAGGGTAGCAGCAACACCATACCCCTCCTTCAATGCTTCCACCACACAGAACCGCCACTGGAtggtgctcatggacacgcctcctcatggggtcaattccaagccacaagtcattgaTTATTACGTGAACACTCTACAGACAGTTCTTGGCAGTGAGGAAGATGCTCAGATGTGTATGTATGATGCTTCATGCGACACCCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCTTCCCAGTTGGCCAGTTTACCTGGGGTCTTATTGGTTAGGCCTGATCCGGATTTCAACTCTTTGAAAAAGGACTATAGTTTATCAAGTGACCAGGCAGGCCATCCGCCAAGATTACAAACTAGAACCAGCATGTTGTTTCCTGCTGGAAATTCAAAGCATTGGCTTGTTAGAATGGACAAGCCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGATTATTATGCTCAAATTTTGACCAAGGTCATGGGGAATGAGAAGGATGCACAGATGTGTATATATCACGTTTCCTGGAAAACAAACTTTGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTGGCTGGTGTGCCAGGTGTCTTATCTGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAAGATTATCAAGGTATTAAGTCAGAAAATAGTTGGAATGCGTCCAATTCTTCTGGCACAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACTTTACGCGCAGCATTTGAAGGCTTTGGCGAGTTAGTTGAAGTTAAAGTTATTATGGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCTAAACCTAACCCACCAAGATACAACAGGAATCATATATGGGAGATCAAAGCAATGCATACTTCATGGCTTATCCTTCCCCTTTACCTCCATTCTGATTTCAGACTTGTCTTCGGTATGCAAGCAGGATTCCTACAGATTGTGTGA 1269 0.3964 MELLSVSVTLGKCQTFSFPKPKTTQIHELPINIRIPNKRSHSNLSSSSCSCNWSITRVAATPYPSFNASTTQNRHWMVLMDTPPHGVNSKPQVIDYYVNTLQTVLGSEEDAQMCMYDASCDTHFGFCCDIDEEISSQLASLPGVLLVRPDPDFNSLKKDYSLSSDQAGHPPRLQTRTSMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVPGVLSVQPDNNFESENKDYQGIKSENSWNASNSSGTSQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNHIWEIKAMHTSWLILPLYLHSDFRLVFGMQAGFLQIV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01962 422 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 45 386 - -
Cca02g01962 422 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 45 386 IPR039206 GO:0016554
Cca02g01962 422 SUPERFAMILY RNA-binding domain, RBD 289 384 IPR035979 GO:0003676
Cca02g01962 422 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 181 267 IPR037045 -
Cca02g01962 422 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 60 154 IPR037045 -
Cca02g01962 422 SMART rrm1_1 300 373 IPR000504 GO:0003723
Cca02g01962 422 Gene3D - 268 387 IPR012677 -
Cca02g01962 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 367 IPR000504 GO:0003723
Cca02g01962 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01962 Cca-Chr2 39224013 39227813 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01962 291 384 C2H2 Transcription Factor Family AT2G19380 32.979 3.99e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01962 - - gmx:100791652 678.707