Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01957 ATGGAACTTCTCTCTGTGTCTGTCACACTCGGCAAATGTCAAACATTTTCCTTTCCGAAACCGAAGACAACCCAAATTCATGAACTTCCAATAAACATAAGAATACCCAACAAAAGAAGTCACTCCAATCTTTCTTCTTCTTCTTGTTCCTGTAATTGGTCCATTACAAGGGTAGCAGCAACACCATACCCCTCCTTCAATGCTTCCACCACACAGAACCGCCACTGGAtggtgctcatggacacgcctcctcatggggtcaattccaagccacaagtcattgaTTATTACGTGAACACTCTACAGACAGTTCTTGGCAGTGAGGAAGATGCTCAGATGTGTATGTATGATGCTTCATGCGACACCCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCTTCCCAGTTGGCCAGTTTACCTGGGGTCTTATTGGTTAGGCCTGATCCGGATTTCAACTCTTTGAAAAAGGACTATAGTTTATCAAGTGACCAGGCAGGCCATCCGCCAAGATTACAAACTAGAACCAGCATGTTGTTTCCTGCTGGAAATTCAAAGCATTGGCTTGTTAGAATGGACAAGCCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGATTATTATGCTCAAATTTTGACCAAGGTCATGGGGAATGAGAAGGATGCACAGATGTGTATATATCACGTTTCCTGGAAAACAAACTTTGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTGGCTGGTGTGCCAGGTGTCTTATCTGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAAGATTATCAAGGTATTAAGTCAGAAAATAGTTGGAATGCGTCCAATTCTTCTGGCACAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACTTTACGCGCAGCATTTGAAGGCTTTGGCGAGTTAGTTGAAGTTAAAGTTATTATGGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCTAAACCTAACCCACCAAGATACAACAGGAATCATGTCACTTCATGA 1170 0.394 MELLSVSVTLGKCQTFSFPKPKTTQIHELPINIRIPNKRSHSNLSSSSCSCNWSITRVAATPYPSFNASTTQNRHWMVLMDTPPHGVNSKPQVIDYYVNTLQTVLGSEEDAQMCMYDASCDTHFGFCCDIDEEISSQLASLPGVLLVRPDPDFNSLKKDYSLSSDQAGHPPRLQTRTSMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVPGVLSVQPDNNFESENKDYQGIKSENSWNASNSSGTSQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNHVTS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01957 389 SUPERFAMILY RNA-binding domain, RBD 288 384 IPR035979 GO:0003676
Cca02g01957 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 367 IPR000504 GO:0003723
Cca02g01957 389 SMART rrm1_1 300 373 IPR000504 GO:0003723
Cca02g01957 389 Gene3D - 268 388 IPR012677 -
Cca02g01957 389 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 60 154 IPR037045 -
Cca02g01957 389 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 267 IPR037045 -
Cca02g01957 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Cca02g01957 389 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 44 386 IPR039206 GO:0016554
Cca02g01957 389 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 44 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01957 Cca-Chr2 39162562 39166792 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01957 291 384 C2H2 Transcription Factor Family AT2G19380 32.979 3.56e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01957 - - gmx:100791652 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01957 02 39162562 39166792 Cca02g01957 02 39162562 39166792 ECH