LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g01954	atgcactcCTCCGACAACTCCGCCAGCGCCAGCACAGAGTGGACGCTGACCACCAAGTCCCACGCCCCCTCCTCCGACCCCTGCTGGGACGCCATACAGCGGGGCGGCGCCACCCTGGCACTGGGGGACTTGCGGTTCCTGCAGCGGGTGGGCAGCGGCGACATCGGAAGCGTGTACTTGGTGGAGCTGAAGGGCTCGAACGCGTGCCTGTTCGCGGCGAAGGTGATGGACAAGAAGGAACTGATGGGGAGGAACAAAGAGACGAGAGCGAAGATGGAGAGAGAGATTCTGCAAGTGGTGGATCATCCCTTTCTCCCCACTCTCTATGCATCGCTCGATTCCCCACGCTGGTCTTGCCTCCTCACCGAGTTTTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGCCAGCCCGATAAACGCTTCCACCACGCCGCCGTTAGGTTCTACGCATCTGAAGTGGTGATTGCGTTGGAGTACCTACACATGATGGGAATAATATACCGTGATTTAAAACCTGAAAATGTGCTCATAAGATCAGACGGTCACATAATGCTCACAGACTTTGACCTCTCGCTAAAAGGCGACGAAAGCACATCAACGGCTCAGATCGTGTTTGATCAAGACCCACCCGCCAACACCTGTTCGAAGGAACCCTCCAAGAACCAATGCGCGCCCGCCATGTCATCATGCATGCTGCCCAATTGCATCGTGCCACCTGTCCCATGCTTCCACCCAAAACGCGGTCGTAGCAAGAGGTCCTCCCGATGTGGGTCCGTGGAGATCATAGCTGAGCCAATAGAAATTCGCTCAATGTCGTTCGTTGGGACCCACGAGTATTTGGCGCCCGAAGTGATTTCGGGTGAAGGCCACGGTAACGGCGTTGATTGGTGGACATTGGGAGTGTTCATTTTTGAGCTCTTCTATGGGATCACACCCTTCAAAGGGCTTGAGCATGAGCTAACCCTAGCCAACATAGTGGCTCGTGCCCTTGAGTTCCCTAAGGAGCCCATGATCCCTGGACCAGCTAGGGATTTGATATCACAACTTTTGGTCAAGGACTCCACTATGAGGCTAGGGTCTACAATGGGTGCTGTAGCAATTAAGCACCACCCCTTTTTCAATGGGGTTAATTGGGCATTGTTGAGGTGTGCTACCCCTCCATACATCCCTTCATCGGACAAGTGCAAGGAGTTGGTTAGGGTCTATAATTGCACAACCAATGCTATAGACTTCTATTAG	1242	0.5427	MHSSDNSASASTEWTLTTKSHAPSSDPCWDAIQRGGATLALGDLRFLQRVGSGDIGSVYLVELKGSNACLFAAKVMDKKELMGRNKETRAKMEREILQVVDHPFLPTLYASLDSPRWSCLLTEFCPGGDLHVLRQRQPDKRFHHAAVRFYASEVVIALEYLHMMGIIYRDLKPENVLIRSDGHIMLTDFDLSLKGDESTSTAQIVFDQDPPANTCSKEPSKNQCAPAMSSCMLPNCIVPPVPCFHPKRGRSKRSSRCGSVEIIAEPIEIRSMSFVGTHEYLAPEVISGEGHGNGVDWWTLGVFIFELFYGITPFKGLEHELTLANIVARALEFPKEPMIPGPARDLISQLLVKDSTMRLGSTMGAVAIKHHPFFNGVNWALLRCATPPYIPSSDKCKELVRVYNCTTNAIDFY	413

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca02g01954	413	PANTHER	PROTEIN KINASE G11A-LIKE	8	413	-	-
Cca02g01954	413	SUPERFAMILY	Protein kinase-like (PK-like)	27	392	IPR011009	-
Cca02g01954	413	MobiDBLite	consensus disorder prediction	1	25	-	-
Cca02g01954	413	SMART	serkin_6	44	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca02g01954	413	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	166	178	IPR008271	GO:0004672\|GO:0006468
Cca02g01954	413	Pfam	Protein kinase domain	46	205	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca02g01954	413	Pfam	Protein kinase domain	271	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca02g01954	413	Gene3D	Phosphorylase Kinase; domain 1	43	128	-	-
Cca02g01954	413	CDD	STKc_phototropin_like	43	391	-	-
Cca02g01954	413	Gene3D	Transferase(Phosphotransferase) domain 1	270	392	-	-

Showing 1 to 10 of 14 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g01954	Cca-Chr2	39139139	39141702	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g01954	46	413	AGC Kinase Gene Family	AT3G44610	64.752	3.54e-179	505

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Cca02g01954		Pkinase	1.7e-33	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g01954	K08286		-	gmx:100786154	751.895

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca02g01954	02	39139139	39141702	Cca02g01954	02	39139139	39141702	ECH

Showing 1 to 1 of 1 entries

Previous1Next