Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01954 atgcactcCTCCGACAACTCCGCCAGCGCCAGCACAGAGTGGACGCTGACCACCAAGTCCCACGCCCCCTCCTCCGACCCCTGCTGGGACGCCATACAGCGGGGCGGCGCCACCCTGGCACTGGGGGACTTGCGGTTCCTGCAGCGGGTGGGCAGCGGCGACATCGGAAGCGTGTACTTGGTGGAGCTGAAGGGCTCGAACGCGTGCCTGTTCGCGGCGAAGGTGATGGACAAGAAGGAACTGATGGGGAGGAACAAAGAGACGAGAGCGAAGATGGAGAGAGAGATTCTGCAAGTGGTGGATCATCCCTTTCTCCCCACTCTCTATGCATCGCTCGATTCCCCACGCTGGTCTTGCCTCCTCACCGAGTTTTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGCCAGCCCGATAAACGCTTCCACCACGCCGCCGTTAGGTTCTACGCATCTGAAGTGGTGATTGCGTTGGAGTACCTACACATGATGGGAATAATATACCGTGATTTAAAACCTGAAAATGTGCTCATAAGATCAGACGGTCACATAATGCTCACAGACTTTGACCTCTCGCTAAAAGGCGACGAAAGCACATCAACGGCTCAGATCGTGTTTGATCAAGACCCACCCGCCAACACCTGTTCGAAGGAACCCTCCAAGAACCAATGCGCGCCCGCCATGTCATCATGCATGCTGCCCAATTGCATCGTGCCACCTGTCCCATGCTTCCACCCAAAACGCGGTCGTAGCAAGAGGTCCTCCCGATGTGGGTCCGTGGAGATCATAGCTGAGCCAATAGAAATTCGCTCAATGTCGTTCGTTGGGACCCACGAGTATTTGGCGCCCGAAGTGATTTCGGGTGAAGGCCACGGTAACGGCGTTGATTGGTGGACATTGGGAGTGTTCATTTTTGAGCTCTTCTATGGGATCACACCCTTCAAAGGGCTTGAGCATGAGCTAACCCTAGCCAACATAGTGGCTCGTGCCCTTGAGTTCCCTAAGGAGCCCATGATCCCTGGACCAGCTAGGGATTTGATATCACAACTTTTGGTCAAGGACTCCACTATGAGGCTAGGGTCTACAATGGGTGCTGTAGCAATTAAGCACCACCCCTTTTTCAATGGGGTTAATTGGGCATTGTTGAGGTGTGCTACCCCTCCATACATCCCTTCATCGGACAAGTGCAAGGAGTTGGTTAGGGTCTATAATTGCACAACCAATGCTATAGACTTCTATTAG 1242 0.5427 MHSSDNSASASTEWTLTTKSHAPSSDPCWDAIQRGGATLALGDLRFLQRVGSGDIGSVYLVELKGSNACLFAAKVMDKKELMGRNKETRAKMEREILQVVDHPFLPTLYASLDSPRWSCLLTEFCPGGDLHVLRQRQPDKRFHHAAVRFYASEVVIALEYLHMMGIIYRDLKPENVLIRSDGHIMLTDFDLSLKGDESTSTAQIVFDQDPPANTCSKEPSKNQCAPAMSSCMLPNCIVPPVPCFHPKRGRSKRSSRCGSVEIIAEPIEIRSMSFVGTHEYLAPEVISGEGHGNGVDWWTLGVFIFELFYGITPFKGLEHELTLANIVARALEFPKEPMIPGPARDLISQLLVKDSTMRLGSTMGAVAIKHHPFFNGVNWALLRCATPPYIPSSDKCKELVRVYNCTTNAIDFY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01954 413 PANTHER PROTEIN KINASE G11A-LIKE 8 413 - -
Cca02g01954 413 SUPERFAMILY Protein kinase-like (PK-like) 27 392 IPR011009 -
Cca02g01954 413 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g01954 413 SMART serkin_6 44 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01954 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cca02g01954 413 Pfam Protein kinase domain 46 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01954 413 Pfam Protein kinase domain 271 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01954 413 Gene3D Phosphorylase Kinase; domain 1 43 128 - -
Cca02g01954 413 CDD STKc_phototropin_like 43 391 - -
Cca02g01954 413 Gene3D Transferase(Phosphotransferase) domain 1 270 392 - -
Cca02g01954 413 Gene3D Transferase(Phosphotransferase) domain 1 129 205 - -
Cca02g01954 413 PANTHER FLIPPASE KINASE 1-RELATED 8 413 - -
Cca02g01954 413 MobiDBLite consensus disorder prediction 1 24 - -
Cca02g01954 413 ProSiteProfiles Protein kinase domain profile. 44 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01954 Cca-Chr2 39139139 39141702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01954 46 413 AGC Kinase Gene Family AT3G44610 64.752 3.54e-179 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca02g01954 Pkinase 1.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01954 K08286 - gmx:100786154 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01954 02 39139139 39141702 Cca02g01954 02 39139139 39141702 ECH