Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01953 ATGGAGGAAGGGTTGGATGCAGATGAAGTGGTGAGTAGCTTGAGGATGAGTGTTGGATCTTGGAGCAGGAGGAGTTGGGTTTCAGAAAGTGTTTCTGAGATGTGGAGTGCTGCTGCAAATGGTGGTGATGTGTTTGAGAGGAGCAATAGGGTTGGTGATGATGATGATGAAGAGCACCTCAAGTGGGCTGCCATAGAGAGGCTTCCCACTTTTGAGAGGCTAAGGAAAAGCTTGGTCAAAAGGGTCTTAGAAGAAGATAGTGGAACAAGGTTTAACTATGAAGAGGTTGATGTATCCAATCTTGGTGTCCTAAACAAGAGGAAACTCCTTGATTCCATACTAAACACTGTTGAGAATGACAATGAGACCTTTCTCCTTAGGATGAGGGAGAGGATTGATAGGGTGGCAATAGAGATTCCAAAGGTTGAAGTCCGATTCGAGCATTTGTCCGTGGAAGGAGATGCATTTAATGGAAGCAGAGCACTACCAACATTAGTGAACTCCACCATGAATGCGATTGAGAGAATTCTCGGATTAATGAATCTTTTTCCTTCGAAGAAAAGTGTTGTCAAGATACTCCAAGATGCTAGTGGAATTGTCAGGCCAAAAAGATTAACCTTGCTTTTGGGGCCTCCAAGATCAGGGAAAACTACATTGCTGCAAGCACTTGCTGGAAAACTCGATAGGAATTTAAGGgtttcaggaagagtcacttactgtggtcatgagttatcagagtttgttcctcaaagaacatgtgcttatattagtcaacataatcttcatcatggagagatgtcagttagagagacactagacttttctggacgttgcttgggagttggGACAAGGAATGATCTACTACTAGAATTAATAAAGCGAGAAAAGCAAGCAGGTCTTAAACCAGATCCAGAGATAGATGCGTTTATGAAAGCCACATCAATGACAGGTCAAGAAAAAAGTCTCATTACAGATTATATTCTCAAGgttcttggattggaaatatgtgctgacactttagtgggagatgaaatgaggaggggaatatctggtggagaaaaaaagaggttaactactggtgaaatgttggttggaccagcaaaagtcttcttaatggatgaaatttcaactggtttggatagttccacaaccttccaaattatcaagttcttaaggcagttagtgcatgccatggatgttacagtgatagtatctcttttacaacctgcaccagaaacatttgaccttttcgatgacttgatcttgctttcagaaggtcacattctctaccaaggacctcgtgaaaatgttctcaatttttttgaaagtgtaggcttcaaatgccctgaaaggaaaggaattgcagacttcttacaagagattacttctagaaaggaccaagagcaatactggttttcaaaggacaaaccatacagttatatgagtgtgcctgagtttgtagatcatttcaataattttagcattggccaacaactttcccaagagcttcaagttccctatgatcgtgctaaaactcaccctgctgcactagttaaaaataaatatgggatctcaaaactagaactcttgaaggcatgtttcgcaagagaatggctactgttgaagcgcagtgctttcatatacatatttaagactactcagattTTGATAATGTCTTTGattactatgacaacgtttcttagaacagaaatgaaaagtggccacattgatgatgggagaaaatattatggtgcactattctttagcctcactaatataatgttcaatggaatggctgagcttgcactaactatttttagacttcctgttttcttcaagcaacgagatttattattttatccggcttgggcttttgcacttcccatatggatctttcgaatccctctctctttggtggagtcaggattatgggttgtccttacttattatactgtagggtatgctccagctgcaagtagATTTTTTCGTCAGTTGTTAGCATTCTTCTGTGTTCATCAAATGGGTTTGTCTCTGTTCCGATTCATTGCTGCTCTTGGAAGAACGCTGGTTGTGGCAAATACGCTTGCTTTCTTTATATTGCTACTTACTTATGTGCTTGGTGGATTCATTGTTGCCAAAGATAACCTTGATCCCTGGATGAAATGGGGCTATTATGCTTCTCCTATGATGTATGGTCAGAATGCCATTGTCATTAATGAATTCCTTGATAAGAGATGGAGTGTTCCCAACATGGATAAAAGAATTCCTGAGCCCACAGTTGGGAAGGCTCTTCTCAAGGCTAGAAGCATGTTTACTGAAGACTATTGGTATTGGATTTGTATTGGTGCTCTCCTAGGCTTTTCTCTGCTTTTCAACATTTGTTTTATATTTGCTCTGACATTTCTCAATCCATTTGGAGATTCTAAATCTATTATTCCAGAAGAGGGAAACGAGAAAAAGAAAACTGCTGAAGAGAGTTCTGTTTCAACTGATAAATCATTTGAAAATGCAGACATTGATATGGATAATAAAAGATTCCGAGAGAGTTCAACTCCCAAAGTAGACACGACAACAACCAAGACGGGAATGGTGTTGCCCTTTAAGCCTCTATCACTTGCTTTTGATCACGTGAATTACTACATCAACATGCCAATTgaaatgcaaaaacatgaaattgaagtgagtcggctccaattactaagagatattagtggtgcttttaggcctggagtactaacagcattagtaggtgtaactggtgctggaaaaaccaccttgatggatgttctagctggaagaaaaactggaggttatattgaaggaagcatcagcatatctggttacccaaaaaaacaagaaacttttgctcgaattagtggatattgtgaacaaaatgatatccattctccaaatatcacagtgtatgaatcagttgtattttctgcttggttgcgtcttggtaatgaggtcaagtcagaaataagaaagatgtttgttgaggaagttatgaaccttgttgagctgcatccagtgagaaattttctagtaggtcttccaggcataaatggtttatcaactgagcaaagaaagagactcactattgctgtagaattagttgccaatccttctatcatctttatggatgagccaacctcaggccttgatgctagagctgcagcaattgttatgcgtactgtcagaaatacagcagatacaggaagaactattgtctgcacaattcatcaaccaagcattgacatatttgaatcttttgatgagctacttttgatgaagagaggaggacaaatcatatataatggtcccttaggtcaaaaatctcataagcttatagagtactttgaggctattccaggagttcctagaatcaaagatggttataatcctgccacatggattttggagatcagttctccaatagttgagggtcagcttagggtagactttgcagaattgtatactaagtcagaattgtatcagaggaatcaagttcttattaaagaactaagcacacctttagaaggaacaaaggaccttgatttccctactaaatactctcagtcctttgttgctcaatgtaaagcatgcttctggaaacaacacttgtcctattggaggaatccacaatataatgtcattcgattcttcatgtcaacatttgtaggtgtaattcttggattcattttttggaaaaaaggagataaaacAGATACAGAGcaagatctaatgaatctaatgggagctatttttgcttctattttccttcttggaggctccaacacttcctctgttcaacctatagttgcaatagaaagaacagtcttctatcgtgaaaaagcagctggaatgtactcagctctaccttatgcaattgctcaggtggcaatagaatgtatttatattgcaatccagacattcacctttacttttatcctttactcaatgatgggttttctttggcaagctgacaagttcttgtggttctactacttcatgttcatgtcatttgtttgcttcacactttatggcatgatgacagtggctctaacaccaaacccccaaattgctgcaattattatgtccttcttcctagtgttttggaatgtattctcaggcttcattatcttcaaatcgcaaattccaatatggtggaggtggtattactgggcatgtccaactgcttggagtttatatggcctagtgacatcccagattggtgacaaagatactccagttgtggtgcctggatcaggatcaatgtcagtaaaagcattccttaagaaatatatggattatgaatatgacttcctgggggttgttgttgtggcccatattgtatttgttgtattgtttctttttgtttttgcttatggtatcaaggtctttaattttcaaaAGAGATAA 4422 0.1418 MEEGLDADEVVSSLRMSVGSWSRRSWVSESVSEMWSAAANGGDVFERSNRVGDDDDEEHLKWAAIERLPTFERLRKSLVKRVLEEDSGTRFNYEEVDVSNLGVLNKRKLLDSILNTVENDNETFLLRMRERIDRVAIEIPKVEVRFEHLSVEGDAFNGSRALPTLVNSTMNAIERILGLMNLFPSKKSVVKILQDASGIVRPKRLTLLLGPPRSGKTTLLQALAGKLDRNLRVSGRVTYCGHELSEFVPQRTCAYISQHNLHHGEMSVRETLDFSGRCLGVGTRNDLLLELIKREKQAGLKPDPEIDAFMKATSMTGQEKSLITDYILKVLGLEICADTLVGDEMRRGISGGEKKRLTTGEMLVGPAKVFLMDEISTGLDSSTTFQIIKFLRQLVHAMDVTVIVSLLQPAPETFDLFDDLILLSEGHILYQGPRENVLNFFESVGFKCPERKGIADFLQEITSRKDQEQYWFSKDKPYSYMSVPEFVDHFNNFSIGQQLSQELQVPYDRAKTHPAALVKNKYGISKLELLKACFAREWLLLKRSAFIYIFKTTQILIMSLITMTTFLRTEMKSGHIDDGRKYYGALFFSLTNIMFNGMAELALTIFRLPVFFKQRDLLFYPAWAFALPIWIFRIPLSLVESGLWVVLTYYTVGYAPAASRFFRQLLAFFCVHQMGLSLFRFIAALGRTLVVANTLAFFILLLTYVLGGFIVAKDNLDPWMKWGYYASPMMYGQNAIVINEFLDKRWSVPNMDKRIPEPTVGKALLKARSMFTEDYWYWICIGALLGFSLLFNICFIFALTFLNPFGDSKSIIPEEGNEKKKTAEESSVSTDKSFENADIDMDNKRFRESSTPKVDTTTTKTGMVLPFKPLSLAFDHVNYYINMPIEMQKHEIEVSRLQLLRDISGAFRPGVLTALVGVTGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNITVYESVVFSAWLRLGNEVKSEIRKMFVEEVMNLVELHPVRNFLVGLPGINGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTADTGRTIVCTIHQPSIDIFESFDELLLMKRGGQIIYNGPLGQKSHKLIEYFEAIPGVPRIKDGYNPATWILEISSPIVEGQLRVDFAELYTKSELYQRNQVLIKELSTPLEGTKDLDFPTKYSQSFVAQCKACFWKQHLSYWRNPQYNVIRFFMSTFVGVILGFIFWKKGDKTDTEQDLMNLMGAIFASIFLLGGSNTSSVQPIVAIERTVFYREKAAGMYSALPYAIAQVAIECIYIAIQTFTFTFILYSMMGFLWQADKFLWFYYFMFMSFVCFTLYGMMTVALTPNPQIAAIIMSFFLVFWNVFSGFIIFKSQIPIWWRWYYWACPTAWSLYGLVTSQIGDKDTPVVVPGSGSMSVKAFLKKYMDYEYDFLGVVVVAHIVFVVLFLFVFAYGIKVFNFQKR 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01953 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 885 1110 IPR027417 -
Cca02g01953 1473 Pfam ABC-2 type transporter 1081 1151 IPR043926 GO:0140359
Cca02g01953 1473 Pfam ABC-2 type transporter 408 462 IPR043926 GO:0140359
Cca02g01953 1473 SMART AAA_5 202 427 IPR003593 -
Cca02g01953 1473 SMART AAA_5 909 1101 IPR003593 -
Cca02g01953 1473 Pfam Plant PDR ABC transporter associated 755 812 IPR013581 -
Cca02g01953 1473 Gene3D - 884 1120 IPR027417 -
Cca02g01953 1473 CDD ABCG_PDR_domain2 869 1107 IPR034003 -
Cca02g01953 1473 MobiDBLite consensus disorder prediction 813 828 - -
Cca02g01953 1473 Pfam ABC-transporter N-terminal 118 167 IPR029481 -
Cca02g01953 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 449 IPR027417 -
Cca02g01953 1473 Pfam ABC transporter 194 375 IPR003439 GO:0005524
Cca02g01953 1473 Pfam ABC transporter 900 1052 IPR003439 GO:0005524
Cca02g01953 1473 Gene3D - 182 483 IPR027417 -
Cca02g01953 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 177 450 IPR003439 GO:0005524
Cca02g01953 1473 MobiDBLite consensus disorder prediction 813 834 - -
Cca02g01953 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 872 1125 IPR003439 GO:0005524
Cca02g01953 1473 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1473 - -
Cca02g01953 1473 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 10 1473 - -
Cca02g01953 1473 Pfam ABC-2 type transporter 529 741 IPR013525 GO:0016020|GO:0140359
Cca02g01953 1473 Pfam ABC-2 type transporter 1198 1410 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01953 Cca-Chr2 39077424 39091813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01953 897 1084 Calmodulin-binding Proteins AT2G36910 27.000 4.24e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01953 K08711 - gmx:100786666 2520.35