Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01947 ATGGCTGACCCATATGGTCTCCCGGAGGATCTCCGGCGACTGATATCATCCAGAACCCATTTAAACCCTTCCAACACCACACACTTACTGGAGCCACTATGTCTTCACCACACTCTCAGTGCTGTCACTGTTACCACTCCACCCAACAGCTATGACCCCAACATGGTTGGGGACGTTTTCTTCCCTCGTCCCTTCACTCACTTCGCTCATCATGACTACTCTTCCACCTCTGCTCTCAACCccacaaccactgctactgcctcggatcacgccactgccactgcTGCATTCTGCAGCATAGAGACTGCAGAGAAAGGGTGGTTTGCCTTTGACTCCGGGAACAACAGGTGGCCTAGACAGGAGACTCTCTCGCTTCTTGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTTGAAGCAATATGTGGAGATCAATCGAACACTACTCATGCCTCACCTTCAGATAAAACCAATCGTGCTGGTGGAAACACTGCTAGTATTCAAACACCAAACCTCACAATCAACCAAGACCATAATGGTGAATCTAGCAACAACCCCAAGTGCTCAGAGAGCCTCAGCATCTCAAACTCATCTGAATTGGAGACATCCTCATCTGAAAACAACGACGAGGATCTTTCAGCCATTGCATTCATGATGAAGCAGTCAAGGGATGAGAAGCAGAAGGGGTCAGATCACAGACAAAGTGATCATAGGAGGGTGAGAAGAAGCTGGAGAGCCAAAGTGGAGGAGATTGTGGATTCTCACATGAGGAAGATCTTAGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAGCAAAGAGAGCAAGAGATGGCATCTAAGGAAGAAGAAAGGAAGAGGAAAGAGTCAATGTGGTTTGACCAACAAGTGCATGAACTGTGGGCTAAAGAGAAAGCATGGGTCGAATCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACATATTGGGGTAGGGGTAGAAGCATTGCCATTCGATGAAGGTATACCAAATAAGAACAAGAGCCAGGGAGAACATATTGATGCCAATGAATTTGCCTCTGATCATGGAAGTAGTAGGTGGAGTGAAATGGAGATTTCAAATTTGATACAGCTGAGGACTGGTTTTGAACAAAGATTCAGGGAAAATGGGGGCTTGGAGAATGGGCTTTGGGATGAAATAGCAGAAAAACTTGCTTGTTTGGGGTGTGATAGGAGTGCAAGTGAGTGCAAGCAAATATGGGATGAGATCAGCATTTCCCTAAGAAGGACAGTGGAGTGTGATGGTGTCAAAAGAAGGCCTTGGTATTTGGGACTTAAGCTGACGGATGATGATGATCTTTGA 1536 0.4388 MADPYGLPEDLRRLISSRTHLNPSNTTHLLEPLCLHHTLSAVTVTTPPNSYDPNMVGDVFFPRPFTHFAHHDYSSTSALNPTTTATASDHATATAAFCSIETAEKGWFAFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQSNTTHASPSDKTNRAGGNTASIQTPNLTINQDHNGESSNNPKCSESLSISNSSELETSSSENNDEDLSAIAFMMKQSRDEKQKGSDHRQSDHRRVRRSWRAKVEEIVDSHMRKILETQDAWMERMLSVVEQREQEMASKEEERKRKESMWFDQQVHELWAKEKAWVESRDAALIEVVRKHIGVGVEALPFDEGIPNKNKSQGEHIDANEFASDHGSSRWSEMEISNLIQLRTGFEQRFRENGGLENGLWDEIAEKLACLGCDRSASECKQIWDEISISLRRTVECDGVKRRPWYLGLKLTDDDDL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01947 511 Pfam Myb/SANT-like DNA-binding domain 115 202 IPR044822 -
Cca02g01947 511 Pfam Myb/SANT-like DNA-binding domain 423 493 IPR044822 -
Cca02g01947 511 Coils Coil 328 355 - -
Cca02g01947 511 ProSiteProfiles Myb-like domain profile. 417 482 IPR001005 -
Cca02g01947 511 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 19 496 - -
Cca02g01947 511 Gene3D - 117 179 - -
Cca02g01947 511 Gene3D - 425 487 - -
Cca02g01947 511 MobiDBLite consensus disorder prediction 206 270 - -
Cca02g01947 511 CDD GT1 423 488 - -
Cca02g01947 511 CDD GT1 115 181 - -
Cca02g01947 511 SMART sant 113 176 IPR001005 -
Cca02g01947 511 SMART sant 421 484 IPR001005 -
Cca02g01947 511 MobiDBLite consensus disorder prediction 283 303 - -
Cca02g01947 511 ProSiteProfiles Myb-like domain profile. 115 174 IPR001005 -
Cca02g01947 511 PANTHER - 19 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01947 Cca-Chr2 39006580 39009513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01947 116 497 Trihelix Transcription Factor Family AT5G03680 43.317 8.39e-86 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca02g01947 Myb_DNA-bind_4 4.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01947 - - gmx:100787750 780.015