Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01941 ATGATGGTAAACCAAAGGGTTGAACAACATGCTATgaaagaagggcaaaggaaaaagaagaggaagaaggaagTTTTGGTTCCTCGTCCTGCATGCTCATGGGTGTATTTTAGTAAGGAGTTTATCAAAGAGTACATTGCTTCCCATCCTGAGACACCAGGCCTTAAAGCTGCAACAAAGGCTGCCTCGAATGCATGGAAGTTGATGTCTCTTGAAGACAAGGAAAAATATGCTAGGCGTGCGCGTGAAGTGTGGGATGGCTACTTGAGTTCTGGTGCTGCCCCTGCCCCCAAGCCAAGGAAACAGACTAAACTGGTAACAAGATGCTCTCCTGGTCGCTTATTCAATGTGTTACAACACCTCACACCTGAACAGAAGGAGGCAGTTAAGAGCATGGGCTTTGGAAACCTCCTTGGTCTTAGATGTCGAACACTTCGACGCAGTTTGTGTCTTTGGTTACTGGATAGGTTTGACACTACTAATTGCAGCTTGGAGATCTGCAATGTGCGCATGCCATTGACTCCAAAAGATGTAGAGTCAGTATTGGGATTAGCGGCCAGTGGCAAAGAAGTGGTAAATTCTGGTCCAGAAGACTTAATTTCAGATTTACGTAACAGTTACAATGCAATAAATCATGGAATTTCAGTGCGACTTTTAGAGGAGCGGTTGGCAACTGCAGAGGCTGGAGATGATTTTAAGAGGTCATTTGTTCTCTACGTGCTGGGAACGCTTCTTTCACCAACAGCTAGGCTGGATGTTAGCCCATCATTTCTCCACTTTCTGACAAATATGGATCTCGTCCATCAGTATAACTGGGGTAAATTCTTGCTTGATAGGCTGGTTCGAGAGGTATCACGCTTCCATCAAGGGAAGCAGAGAGCTGTTGGTGGTTGTCTCTTATTTTTGCAGGTAAATTTTTTTTTCATCAATTTTTATTTAACTAATAATTTTTAA 954 0.4172 MMVNQRVEQHAMKEGQRKKKRKKEVLVPRPACSWVYFSKEFIKEYIASHPETPGLKAATKAASNAWKLMSLEDKEKYARRAREVWDGYLSSGAAPAPKPRKQTKLVTRCSPGRLFNVLQHLTPEQKEAVKSMGFGNLLGLRCRTLRRSLCLWLLDRFDTTNCSLEICNVRMPLTPKDVESVLGLAASGKEVVNSGPEDLISDLRNSYNAINHGISVRLLEERLATAEAGDDFKRSFVLYVLGTLLSPTARLDVSPSFLHFLTNMDLVHQYNWGKFLLDRLVREVSRFHQGKQRAVGGCLLFLQVNFFFINFYLTNNF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01941 317 SUPERFAMILY HMG-box 15 89 IPR036910 -
Cca02g01941 317 CDD HMG-box 27 88 - -
Cca02g01941 317 Pfam Plant mobile domain 173 304 IPR019557 -
Cca02g01941 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 2 1 306 - -
Cca02g01941 317 Pfam HMG (high mobility group) box 28 89 IPR009071 -
Cca02g01941 317 Gene3D High mobility group box domain 11 90 IPR036910 -
Cca02g01941 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 1 306 IPR044286 -
Cca02g01941 317 SMART hmgende2 26 97 IPR009071 -
Cca02g01941 317 MobiDBLite consensus disorder prediction 1 23 - -
Cca02g01941 317 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 27 83 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca02g01941 HMG_box 1.7e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01941 - - gmx:100782920 532.332