Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01937 ATGCCCACTCAAGACTCTCCCTCCCACGCGCCCACGCGCCACCACTTCCCTTACTCCTCCTCCACTCCCTACTACTACCGGAAGGACCGAGAGGAATGGAACGACACGGCGATCGCGTGTCTGTTGGAGGCGTACACGGAGAAGTTGAACGAGCTGAAGCGCGGCAACCTCCGCGGGCGCGACTGggaggaggtggcttgggcggtggcggagcggtgcggcggtggcggAGAGGGGAAGCATGAGAAGAGCGTGGAACAGTGTAAGAATAAGATTGATAATCTGAAGAAGAGGTATAAGGTGGAGCTTCAGAGAATTGGGAGTGGTGGCATTGCCACTAGTCACTGGCATTGGTTTAAGAAGATTGAAACTATTGTTGGCGACTCTCTCTCTGTTAAAACTGTTTCTGATGATGACAAGGCtggtgctagtggtggtggtggtggtggtgCCAATTCCTCTTTTATGGCTAGACAAACCAAGAACGGCAGATATGCACCTAGCAATGCTGTCATGGCAAACCACCTAAAGACGAAACCAGCATCGAATGTAAAATGGCGCAGAGTTTTGTTTAAAATTAGTGGCTCTGCATTGGCTGGAAACTTCCGGAACATTGACCCCAAGGTGGCAATGCAGATTGCTGGGGAAGTGGCAACAGCTTGCCGCCTTGGTGTGGAGGTGGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATACATGGGTGTCTGCTACTGGGCTGGATAGACCTACAGCATACCAAATAGGTATGATGGCAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAGAAGTTGGGTATTCAAGCACGTGTTCAGAGTGCATTCTCAATGCCAGAGGTTGCTGAACCATATAGCAGGCAACGAGCTGTTAGACATCTTGAGAAGGGAAGGGTTGTCATATTTGGTGGCATTGGTGCTGGCACCGGAAATCCACTTTTTACGACAGATACAGCTGCAGCTCTCAGAGCTTCTGAACTTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGTGTTTTTGACTGCCATCCCGATAATGATAATGTAACACTTGATCACATTTCCTTTAGGGAAGTTGTTTCTAAGTCCATGGATATGATGGCACTGACATATTGTGAAGAGAATGGCATACCTGTTGTAGTCTTCAACATGCTTGAACCCGGCAATGTTTCAAGAGCATTATGTGGAGATCAAGTTGGCACTTTGATCGGTCAAACTGATGGCTAA 1260 0.4437 MPTQDSPSHAPTRHHFPYSSSTPYYYRKDREEWNDTAIACLLEAYTEKLNELKRGNLRGRDWEEVAWAVAERCGGGGEGKHEKSVEQCKNKIDNLKKRYKVELQRIGSGGIATSHWHWFKKIETIVGDSLSVKTVSDDDKAGASGGGGGGANSSFMARQTKNGRYAPSNAVMANHLKTKPASNVKWRRVLFKISGSALAGNFRNIDPKVAMQIAGEVATACRLGVEVAIVVGGRNFFCGDTWVSATGLDRPTAYQIGMMATVMNSILLQSALEKLGIQARVQSAFSMPEVAEPYSRQRAVRHLEKGRVVIFGGIGAGTGNPLFTTDTAAALRASELNADAVLKGTNVNGVFDCHPDNDNVTLDHISFREVVSKSMDMMALTYCEENGIPVVVFNMLEPGNVSRALCGDQVGTLIGQTDG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01937 419 Pfam Amino acid kinase family 188 394 IPR001048 -
Cca02g01937 419 MobiDBLite consensus disorder prediction 137 156 - -
Cca02g01937 419 Gene3D - 33 101 - -
Cca02g01937 419 Coils Coil 78 105 - -
Cca02g01937 419 SUPERFAMILY Carbamate kinase-like 185 414 IPR036393 -
Cca02g01937 419 PANTHER KINASE, PUTATIVE-RELATED 20 417 - -
Cca02g01937 419 CDD AAK_UMPK-PyrH-Ec 187 415 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cca02g01937 419 Gene3D - 177 418 IPR036393 -
Cca02g01937 419 Hamap Uridylate kinase [pyrH]. 184 415 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cca02g01937 419 Pfam Myb/SANT-like DNA-binding domain 30 124 IPR044822 -
Cca02g01937 419 PANTHER URIDYLATE KINASE 20 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01937 Cca-Chr2 38855691 38859093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01937 33 149 Trihelix Transcription Factor Family AT3G14180 40.171 1.69e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca02g01937 AA_kinase 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01937 - - ccaj:109789445 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01937 02 38855691 38859093 Cca02g01937 02 38855691 38859093 ECH