Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01936 ATGGATGTGCCGAAACACCGCTCCACTCGAACTACGTCTCTCAGAGACGCCTCCGACTCCTCCAAAATGGAAGGCACCGGTAGCTGGGACGCTATCGAATGGACCAAGATTGAGCCAATTCCGCGCTTCGTCTCGCACGCGAATCTCGATTTCTTGCTCGAGTCGGAGCAAGTTGCAGCCGAAGGACATGGTGTTGTTCTTGTTAATACAGATGATGCAGGCACACTGATGGTAACAAATTTTCGTCTTATTTTTTTGAGTGAGGGAACTAGAAAAGTTATTGCCCTCGGAACAATACCACTAGCAACCATTGAGAAGTATAACAAGATAGCTGTAAAGGTCCAGTCAAATACTCGCAATGTTGACAAAACACCAACACAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTTTAGTCTTCAGTTTCAGGCCACGCACAAAACAGAGACGTGTGGTATTTGATGCACTACATAGGTGTACAAAGCCATCAAGACTATGGGATCTTTATGCTTTTGCAGCAGGACCTTCTAGGTTTCAGAACACTTCTCCACTGGTTCGCTTATTGGATGAATATTTTCGGCTTCTTTGCCTAGATTCTTATCGTGCATCAATCGATATAATTGAAAATGGGTCCTTCACCTTGTCAAATGACCTATGGAGAATAAGTGGCGTGAATGCCAATTATGCAATGTGCCAGAGTTATCCATTTGCTTTGGTCGTTCCAAAAATCATTAGTGACGATGAAGTGCTCCAGGCTTGCAGCTTCCGGGCAAGATGTCGACTACCTGTAGTTTCATGGTGTCATCCTTTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTTGGTCTTATGATGAATATGAGGAGCAATCTGGATGAAAAACTTGTGGCTGCCCTTTGCAGCAAACTAGAGAATGGCTCGAGAAGAAAGCTATATATTGCTGATGCTCGGCCAAGGAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGGTAGTCTTTTTGGGGATAGATAACATCCATGCTATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAAAGCGTCATCAGATGGAATGTCCTCTTTTTTGAGACAAGGTGGGTCAACGTGGGGTGGTGGCAATTTAAGTAGCATGTCTGCTTCAGTATCAACGCTTGGGGACAGTGGATGGTTGCTGCATGTTCAAAGTGTGTTGGCTGGTGCAGCTTGGATTGCTGCTCGTGTTGCAATGGAACATGCCTCAGTTCTTGTACATTGCAGTGATGGGTGGGATAGGACAAGCCAATTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAGGCACTCGTTGAAAAAGACTGGCTTGCTTTTGGTCATCCATTTTCTGATAGGGTGGGAATGCCATCTGTCTCTGGGACTGGTAACATGCCTTTTGAGTTATCTAGACAATCTTCAGCTGGTAGTTTCCCAGCATCACCCATGCGCCAGTCATCAGGAACATTCTCATCACAAACTCAAGCTTCATCTCACTCAAATAACTCCAACAACTATTCTCCCATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTAATGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTTGTAGACTGCATGATTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAAGGAAAGGAAGCTATGCAATGTTTATGAGGCATGTGGATGTCTGTGGTTATACTTGGCTGATTTGCGGACATCAGAAGGAGGTTCCCATGTGCATTACAATCCCTTTTATGATTCACTGAAGCATAATGGTCCTCTTCTGCCCCCAGCAGCAGCCTTAGCCCCTACATTGTGGCCCCAATTTCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAATCTGGGGAGATTGAAGCAAAATGCAGGAAGATAGTTATGAAATACTCTGAGATGCAAAAGGCTAAAGAAATGGCAGAAAGGAAAGCTAAAGAAGTTACAAATTCGATGGAGTCATTGAATGTAGAATTACGGCGTGAGAAGCAGATAAACAGCTCAGCTATGAACATGGCCAAGAGTGCAAGCAAAGAAAATATGGCCATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCATGTCTCTAGTAGTGGTGAATGCACTGTTGACATCGAAAGCAACCCAGACATTCTGTGTTGTTCCTATAGGAAAGAATCAAATAGTAACGTGCGAGATGAGAAAAAGGACGTGTCTGTTTCGGTAGTGGTTACTGCCGATGATGATGATAGATGTAATAATGCAATTGGTCGGGTATGTGAATATTTGTGCCCATTTCGCTCTGGAGATGGAGGCTGCAGATGGCCAAATGGTGATTGCGCTCAATTTGGTAGCCAGTATGTTGGTCTGAAGGCAAATTTTGATGCATTTGACCAAATGTCAATTAATGATAGTTATTTCAAGTCTGAGTGA 2547 0.4393 MDVPKHRSTRTTSLRDASDSSKMEGTGSWDAIEWTKIEPIPRFVSHANLDFLLESEQVAAEGHGVVLVNTDDAGTLMVTNFRLIFLSEGTRKVIALGTIPLATIEKYNKIAVKVQSNTRNVDKTPTQRLLQVIGKDMRILVFSFRPRTKQRRVVFDALHRCTKPSRLWDLYAFAAGPSRFQNTSPLVRLLDEYFRLLCLDSYRASIDIIENGSFTLSNDLWRISGVNANYAMCQSYPFALVVPKIISDDEVLQACSFRARCRLPVVSWCHPLTGAVVARSSQPLVGLMMNMRSNLDEKLVAALCSKLENGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEVVFLGIDNIHAMRESFVRLREYMDTHGKASSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDSGWLLHVQSVLAGAAWIAARVAMEHASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSVSGTGNMPFELSRQSSAGSFPASPMRQSSGTFSSQTQASSHSNNSNNYSPIFLQWVDCVSQLMRMYPFAFEFSAAFLVDFVDCMISCRFGNFLCNSEKERKLCNVYEACGCLWLYLADLRTSEGGSHVHYNPFYDSLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQSGEIEAKCRKIVMKYSEMQKAKEMAERKAKEVTNSMESLNVELRREKQINSSAMNMAKSASKENMAIKRAIQSMGCKVHVSSSGECTVDIESNPDILCCSYRKESNSNVRDEKKDVSVSVVVTADDDDRCNNAIGRVCEYLCPFRSGDGGCRWPNGDCAQFGSQYVGLKANFDAFDQMSINDSYFKSE 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01936 848 Coils Coil 675 709 - -
Cca02g01936 848 MobiDBLite consensus disorder prediction 505 535 - -
Cca02g01936 848 SMART gram2001c 41 111 IPR004182 -
Cca02g01936 848 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Cca02g01936 848 PANTHER MYOTUBULARIN-RELATED 19 847 IPR030564 -
Cca02g01936 848 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 211 654 IPR029021 -
Cca02g01936 848 Pfam Myotubularin-like phosphatase domain 171 592 IPR010569 -
Cca02g01936 848 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 847 - -
Cca02g01936 848 MobiDBLite consensus disorder prediction 1 26 - -
Cca02g01936 848 CDD PTP-MTM-like 261 552 - -
Cca02g01936 848 SUPERFAMILY PH domain-like 52 175 - -
Cca02g01936 848 Gene3D - 63 162 IPR011993 -
Cca02g01936 848 ProSiteProfiles Myotubularin phosphatase domain. 198 650 IPR010569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01936 Cca-Chr2 38830098 38855352 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01936 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 67.678 0.0 1158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01936 K18081 - gmx:100781842 1503.03