Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01928 ATGATATCTACTAGCAAGCTTTCTGATTTCTATGTGCAGAAAGGTCGTCTATCAGAGGACGAGGCACGATTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATACATACACAATTTGGGAGTGATACATCGCGATATTAAGCCAGAGAATTTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATCACTGTCCTTCCAAATGCAGCATCAGATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGAAATGACCTTTGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCCCCTTTTAAAGACGCAAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGAACTTAGATTTCCAGATTACTTTTCTGATGAAGCAAGAGACCTTGTTGACCGCCTGTTGGATTTGGACCCCAGCAGGAGACCAGGTGCAGGACCTGATGGTTATGCTATTTTGAAGATGCACCCTTTTTTCAAGGGGGTTGACTGGGATAACTTGAGGGCACAGATTCCTCCAAAACTTGCTCTAGAACCTTGTACTCAGTCGCCTGCTGGTGATGATGTTCATGACTCATCATGGAGTCCCTCTCACATTGGAGATGGTTCTGCTTCTTTGGCTAGACAACCTGATGGTGCCGCATCATCTTCTGAAGGAACTGGTCACATAACTAGGCTAGCTTCAATTGATTCCTTCGATTCAAAATGGCAACAATTTTTGGATCCTGGGGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAACTAACAAGCAAGAAGGTGCAGCTCATCCTCACCAACAAACCAAAGTTGATCTATGTGGACCCGTCAAAGTTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGACTACTCCATCAAATTTCAAGATTTGCACACCTAAAAAGGTAATGTCGTTTGAGGATGCAAAGCAAAGAGCATGGCAGTGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA 1104 0.4203 MISTSKLSDFYVQKGRLSEDEARFYAAEVVDALEYIHNLGVIHRDIKPENLLLTAEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARELRFPDYFSDEARDLVDRLLDLDPSRRPGAGPDGYAILKMHPFFKGVDWDNLRAQIPPKLALEPCTQSPAGDDVHDSSWSPSHIGDGSASLARQPDGAASSSEGTGHITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTTPSNFKICTPKKVMSFEDAKQRAWQWKKAIEGLQNR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01928 367 ProSiteProfiles Protein kinase domain profile. 1 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01928 367 MobiDBLite consensus disorder prediction 208 250 - -
Cca02g01928 367 SUPERFAMILY Protein kinase-like (PK-like) 5 240 IPR011009 -
Cca02g01928 367 Gene3D - 243 367 IPR011993 -
Cca02g01928 367 Gene3D Transferase(Phosphotransferase) domain 1 6 204 - -
Cca02g01928 367 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 363 - -
Cca02g01928 367 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 6 363 - -
Cca02g01928 367 Pfam Protein kinase domain 4 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01928 367 MobiDBLite consensus disorder prediction 216 232 - -
Cca02g01928 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 41 53 IPR008271 GO:0004672|GO:0006468
Cca02g01928 367 SMART serkin_6 1 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01928 367 Pfam PH domain 264 366 IPR033931 -
Cca02g01928 367 Coils Coil 347 367 - -
Cca02g01928 367 SUPERFAMILY PH domain-like 183 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01928 Cca-Chr2 38674438 38679564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01928 6 367 AGC Kinase Gene Family AT3G10540 80.110 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Cca02g01928 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01928 K06276 - gmx:100788780 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01928 02 38674438 38679564 Cca02g01928 02 38674438 38679564 ECH