Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01925 ATGGGTGAGAGTCAAGAGAACGATGCTCTTCCAGAGAACAAGCCTCCCACCGAACAGGAAATTTCTGATGAACTAGACCTGAGAATAAAGAAGTATCTCAGAGGAGAAGGTGCTAATCTGGAGGTTTTGAAGGATAAAAAGTTGAAGGGTCAACTAGCTGTTAAGGAAGAATTATATGGAAAATCTGCAAAGGCTGCTGCTAAGGCTGAGAAGTGGCTTATGCCTAGTGAAGGGGGTTATCTGGAGGCTGAAGGCATAGAGAAGACATGGAGGTTCAAACAGGAGGCAATAAGTCGTGAAGTAGACATCTCAAGCTCAAGGAACCAATATGATATTGTTTTACCAGAACTTGGTCCATACACACTGGATTTTACTTCAAGTGGCCGGTATTTGGCTGTGGGTGGTCGCAAGGGCCATCTGGGAATTGTGGACATGATAAGTCTGAGACTAATTAGGGAGTTTCAGGTAAGGGAAACAGTCCGTGATGTGGCATTCTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAGTATTCATACATCTATAATCGAGAAGGCACAGAGCTTCACTGCCTCAAGGAACATGGTCCAGTATTGAGGCTTCAGTTTCTAGAAAATCATTTTCTCTTGGCTTCAATCAACAAATTAGGACAACTTCGATATCAGGATGTTACAATGGGTACCATGGTTGGTAATTTTCGAACTGGCTTAGGACGGACAAATGTGATGCAAGTAAACCCCTTCAACGGGGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTTACCATGTGGAAGCCAACCAGTTCTTCTCCTCTTGTCAAGATGCTATGTCATCATGGGCCTGTCTCAGCACTGGCATTTCACTCAAATGGCCACTTGATGGCCACTGCTGGGAAAGATAAAAAAATTAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTTCAAACACTACCAGGTCATGCAAATACCCTGGATTTTAGTCAAAAAGGCTTGCTTGCATGTGGTAATAATTCATCAATCCAGGTTCTGCGAGATGTTTCTGGTACACAAAATTATTCTAGGTACATGACTCATTCCATGGTGAAAGGTTACCAGATAGGAAAATTAGTATTTCGACCATATGAAGATGTTCTGGGCATAGGTCATTCCATGGGCTGGTCCAGTATTCTTATTCCAGGAGCAGGAGAACCCAACTTTGACTCGTGGGTTGCAAATCCGTTTGAAACTAATAAACAGAGAAGAGAAAAGGAAATACGGTCTCTTCTTGATAAGCTTCCACCTGAGACTATCATGCTGGATCCCAGCAAGATTGGTACTGTAAAACCCAAAAAAGAGAAGACAGCAAAGCAAGATAAAGAGGCTGAGATAGAAGCTGCCCTTGAAGCAGCTAAGGGCATAAAACTGAAGAACAAATCGAAAGGAAGAAACAAGCCAGGTAAAAGGATGCAGAAAAAGCAAGAGGCAATTGCAAGAGTGAAAAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAACATATCAAGAAAGAAGCAGAAAAATAGTGAGGGTGTTGAACTACCAAAATCTTTACAGCGTTTTGCTCGTAAAAAGGCATCTTCATGA 1608 0.4235 MGESQENDALPENKPPTEQEISDELDLRIKKYLRGEGANLEVLKDKKLKGQLAVKEELYGKSAKAAAKAEKWLMPSEGGYLEAEGIEKTWRFKQEAISREVDISSSRNQYDIVLPELGPYTLDFTSSGRYLAVGGRKGHLGIVDMISLRLIREFQVRETVRDVAFLHNELFFAAAQKKYSYIYNREGTELHCLKEHGPVLRLQFLENHFLLASINKLGQLRYQDVTMGTMVGNFRTGLGRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSSSPLVKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNNSSIQVLRDVSGTQNYSRYMTHSMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETNKQRREKEIRSLLDKLPPETIMLDPSKIGTVKPKKEKTAKQDKEAEIEAALEAAKGIKLKNKSKGRNKPGKRMQKKQEAIARVKRPYLEQKIQEEENISRKKQKNSEGVELPKSLQRFARKKASS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01925 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Cca02g01925 535 MobiDBLite consensus disorder prediction 468 535 - -
Cca02g01925 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Cca02g01925 535 Coils Coil 450 470 - -
Cca02g01925 535 PANTHER WD-REPEAT PROTEIN BING4 10 531 IPR040315 -
Cca02g01925 535 PANTHER BNAANNG36350D PROTEIN 10 531 - -
Cca02g01925 535 MobiDBLite consensus disorder prediction 482 518 - -
Cca02g01925 535 SMART BING4CT_2 355 435 IPR012952 -
Cca02g01925 535 SUPERFAMILY WD40 repeat-like 117 383 IPR036322 GO:0005515
Cca02g01925 535 SMART WD40_4 105 144 IPR001680 GO:0005515
Cca02g01925 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Cca02g01925 535 SMART WD40_4 186 224 IPR001680 GO:0005515
Cca02g01925 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Cca02g01925 535 SMART WD40_4 227 266 IPR001680 GO:0005515
Cca02g01925 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Cca02g01925 535 MobiDBLite consensus disorder prediction 1 22 - -
Cca02g01925 535 Gene3D - 99 238 IPR015943 GO:0005515
Cca02g01925 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Cca02g01925 535 Gene3D - 239 360 IPR015943 GO:0005515
Cca02g01925 535 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Cca02g01925 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01925 118 331 U-box Gene Family AT2G33340 24.336 3.99e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01925 K14768 - gmx:100802940 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01925 02 38640493 38646513 Cca02g01925 02 38640493 38646513 ECH