Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01923 ATGGCGATCAGGGCTGCTTCAGGTTCTATACCGAGTGCAGACACAAGTAGTGCCGATAAGGAGGAGGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGACTTGATTGTGGGCTCATGCCTACAGACTCCTGAAGATGTTGACAAGTTGCATAGAATTGGAGTAAAAACTATATTTTGCTTACAACAAGATCCAGACCTTGAATATTTTGGAGTTGACATTAATGCCATACGAGAATATGCCAAAACGTTCAATGACATACAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATCTAAGGATGCGACTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAACGGTGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCTGGGTTATAAACTCAATGAGGCTCATACACTACTCCAGAGCAAAAGGTCATGCTTTCCGAAACTGGATGCCATCAAGAGTGCAACTGCTGATATTCTTACAGGCCTCAGTAAGAAGCCTGTCACTTTGGCATGGGAAGACAGCAATTGCTCTACGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAAAGTTTGATGACAAAGAAGGTTCGTGGTTTCTCAAGAAGGAATTGCCTGAAGGACTCTACGAATACAAGTACATTGTTGATGGGGAATGGACTTGCAATAAAGATGAGCTTGTAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAGTCCTTGACGACAGCAGCAGTGTTCGTGCCTCCCTTCGTGAGAGATTGACTAGTGATGATCCTGATCTCACAAAGGATGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATCAGTGA 996 0.4277 MAIRAASGSIPSADTSSADKEEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLHRIGVKTIFCLQQDPDLEYFGVDINAIREYAKTFNDIQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKPVTLAWEDSNCSTVEISGLDIGWGQRIPLKFDDKEGSWFLKKELPEGLYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFIQVLDDSSSVRASLRERLTSDDPDLTKDERLRIKEFLEACPDEDQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01923 331 CDD DSP_laforin-like 48 195 IPR045204 GO:0019203|GO:0046838
Cca02g01923 331 SUPERFAMILY E set domains 207 290 IPR014756 -
Cca02g01923 331 Coils Coil 329 331 - -
Cca02g01923 331 MobiDBLite consensus disorder prediction 1 30 - -
Cca02g01923 331 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 191 IPR029021 -
Cca02g01923 331 CDD E_set_AMPKbeta_like_N 208 289 - -
Cca02g01923 331 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 126 184 IPR000387 GO:0016311|GO:0016791
Cca02g01923 331 Gene3D Protein tyrosine phosphatase superfamily 42 322 IPR029021 -
Cca02g01923 331 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 2 330 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cca02g01923 331 Pfam Glycogen recognition site of AMP-activated protein kinase 208 291 IPR032640 -
Cca02g01923 331 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 2 330 - -
Cca02g01923 331 ProSiteProfiles Dual specificity protein phosphatase domain profile. 49 206 IPR020422 GO:0006470|GO:0008138
Cca02g01923 331 SMART dsp_5 49 199 IPR020422 GO:0006470|GO:0008138
Cca02g01923 331 Gene3D Immunoglobulins 204 294 IPR013783 -
Cca02g01923 331 Pfam Dual specificity phosphatase, catalytic domain 92 187 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01923 Cca-Chr2 38620318 38628210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01923 48 330 Protein tyrosine phosphatase (PTP) family AT3G52180 71.378 1.88e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01923 - - gmx:100786287 637.491