Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01912 ATGACGGATTTTCAGCCGCTCCAGCAGAAGCCTGAGCCTGCTGATGCCCATGCTGGCTTTGAGCGTGGACTGGAGGACTTTATGCGTGGCCATTTGGATGATTGTATGTCGTTTGCTTCGTGTAGCTCCTCCCCTGCGCCGGATGACGAGGACGACGAGGGCGATCAGCTGGTTCGGAGGAGACGGAGGTCTGACCTTGAAGGGGATGATTTGGCTGAGTCCTCTGCTGCACGCAGGCGCCATTCCCGGATTTTGAGCAGATGGGCTGCACGGCAGGCACAGGAGATGATAACTACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCCGGGTTGCATACTGTCTCGATGTTGGATTCTTCTTTTCTCAGGGGCTCGCAGTCTCCAACTTCTGGCCAGGAGGAGGCTGTGGAGAGGCCGAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAAGATGAGCATTTATTGAACCGGGCGCGCGAAAGGATGAGGGTAAGGTTGCGGCAGCAAAGGAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCTGATAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGGTCAAGGAATGCACATGGGGATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAACAACCGTAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGGGGGAGCCGGAGAGATGCTCAAGTAAGTGAGGGTGCTCAAGTTGATCGAGTTCGCGATGTAGTAGCTGATAATGATGAGGGTCAGCCGGAGCATGTTCGACGGGACATGTTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATCTACTTGTCAGGATAGAAAGGGAAAGACAAAGAGAACTGCAGGGTTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCTCCGTCTATGGCTGCAACTGAATTAGTTCAACTAAGACAACGACACACAGTCTCTGGTTTAAGGGAGGGTTTTCGATCAAGATTAGAAAATATTGTTCGTGGTCAAGCGGGCACCAATCCTGATACCACATCAAATAGTAATGCCAGTGAAACAAGAGGCAATGAGAACCAAGCAAACAGTCTGGTAGATGGCCAGCAAGAAAACTATGAACAAGAACAGATTAGGAGCCTGGAAACTGATGTGCATCAGCTGGCGCCTAATCGGACAGGAACTTTAGAGAGTAGGGCAAGTGAGAGTATTAGTTGGCAAGAAGCCAGTAATCAAGGAGGGAATTGGCAGGAACAAATTGCTGAAGAAAGGGGAGGAAACTGGCAACAGAGTCCATTCAATCAGATAAGAGATGGCAGGGCAGTCAGCAATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAAGATCCTCATCCACGGGAAGCTCAAAGAATTTGGCATGAGGATAACACAAGGGAAACTGTTGGTAATTGGTCTGAAGGACCTTCTGGAGCTTCAAGAAATCGCCGTGGGGTTCCTTTTAGAAGATTCAACAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTCTCTAACCTTCTTCGTAGTGGATTCCGTGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCAGGCACCAATTGACTGGGATTTACATCGGAATTTGCCAACACCAACCCCTGCCTCACCTGAACGAGACCCGGATCAGCAGGGTGATGAACGTGATGAGGGTCAGCGTGAAACCATCAACAGGCCTTCACTGGTGTTGCCTTCTCCACCAGTACCTCCACCACAACCACTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCTGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCAGCTCTGAATCGCTCAGGTGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAGCCATATCGATTCTCTTTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAGTTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2553 0.4861 MTDFQPLQQKPEPADAHAGFERGLEDFMRGHLDDCMSFASCSSSPAPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEEAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRQQRNSDSNTNVSSTMSDSRGSENQGSLGDASESENDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSEGAQVDRVRDVVADNDEGQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAATELVQLRQRHTVSGLREGFRSRLENIVRGQAGTNPDTTSNSNASETRGNENQANSLVDGQQENYEQEQIRSLETDVHQLAPNRTGTLESRASESISWQEASNQGGNWQEQIAEERGGNWQQSPFNQIRDGRAVSNWPQEPPRNLAGEDPHPREAQRIWHEDNTRETVGNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGQAPIDWDLHRNLPTPTPASPERDPDQQGDERDEGQRETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSGGENGLGAETSDDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01912 850 MobiDBLite consensus disorder prediction 432 469 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 538 566 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 649 698 - -
Cca02g01912 850 ProSiteProfiles Zinc finger RING-type profile. 798 837 IPR001841 -
Cca02g01912 850 MobiDBLite consensus disorder prediction 552 566 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 173 244 - -
Cca02g01912 850 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 850 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 177 221 - -
Cca02g01912 850 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 850 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 481 514 - -
Cca02g01912 850 SUPERFAMILY RING/U-box 797 843 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 125 145 - -
Cca02g01912 850 Pfam Zinc finger, C3HC4 type (RING finger) 795 842 - -
Cca02g01912 850 Coils Coil 727 747 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 1 22 - -
Cca02g01912 850 CDD mRING-HC-C3HC5_NEU1 797 837 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 222 244 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 668 683 - -
Cca02g01912 850 MobiDBLite consensus disorder prediction 434 469 - -
Cca02g01912 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 782 848 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01912 Cca-Chr2 38512375 38518415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01912 780 844 C3H Transcription Factor Family AT3G06140 39.394 1.23e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01912 - - gmx:100805607 1497.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01912 02 38512375 38518415 Cca02g01912 02 38512375 38518415 ECH