Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01907 ATGTCAGGAGAGGAAGTTTGGTCATCAAATGAAGAAGAGTATAACAAACCTCAGCCTCCATTTGGTAACAAGAGTGGCTACGATTCAAGAACAGGCATTTATCACTCTCTAGTTAAGCTTGACACCAAGCATGAACTCCCAACAAAGCTTGACCTCAACACTGCCAATTTTGTGCTGTCACAGTTTCCACAAGCAGGCCTTGCTGAGGCAAGAATTGCATTCATTGATTCGAGTACTAATAGGAGTGTAAGCTATGCTGAGCTAAGACAATCTATTTACTCTCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAGGAAAGGAGATGTGGTGCTTGTGTTATCGCCAAACTCAATCTTGTACTCAGCCATATGCCTAGCTGTGTTATCAGTTGGAGCAGTTCTCACCACTGCCAACCCCATCAACACTGCCTCAGAAATCGCCAAGCAAGTGCGCGATTCGGGTGCTAAACTAGCCATCTCAGCTCCTGAGGAGCTACACAAGTTGATCCCAACTGGGGTTCCTACAATTCTCACATCTCGTTCTTCTGATGGCAAGATGTTATCAGTTGAAGAGTTGATAGAGGGCTGTTATGGTTCACCAGAGTTTTTGCCACATGTTCCTGTGGCTCAATCAGACACTGCTGCTATACTTTACTCTTCAGGTACCACAGGAGTAAGCAAGGGTGTGGTTTTGACACATGCAAATCTCATTTCCATAATGAGACTACTCTGGTGGTCTGCTGATGTCAGTGCATCACAAGATGATGTTTTCTTGGCCTTCATTCCAATGTTTCATGTCTATGGACTTGTGTTCTTTGGATTTGGATTGTTGTGCGTTGGCGTCACAACAATTTTGATGCAGAAGTTTGACTTGCCGGCTATGCTTGATGCAATCCAGAAGCACAAGGTTAACAACTTACCAGCAGTGCCACCAGTGATCCTTGCACTAGTGAAACATGCAAGCAAAATTAGGTGTGACTTGTCAAGCCTAAGAAGGGTGGGGTCAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACAGGATTTTAGGAGGATGTTTCCTTGGACTGAACTAAGGCAAGGTTATGGACTAACAGAAAGTTGTGGTGGAGCAACATTTTTTGCCTCAGATAAAGATGCTAAGGCTCATCCAGATGCATGTGGGAGGCTGCTCCCAACTTTTTGTGCAAAAGTGGTGGACACTGAAACGGGGAAGCCTTTGCCTCCTAACAAAGAAGGAGAGTTATGGTTCAAAAGTCCTACTATTATGAAAGGATATCTAGGAAATTTGGAGGCAACAACTGCAACCCTTGATTCAGAAGGTTGGTTGATGACTGGTGATCTTGGTTACATTGATGAGAATGGATTTGTTTACATAGTTGAACGGATAAAAGAGCTAATCAAGCACAATGGATATCAGGTGGCTCCCGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATAGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTAAACTCTCAGAAGATCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGCAAGGATCTTGTTTCTCAAAGCAAATATCAACTTGTCTCCAAGTTATGA 1716 0.4406 MSGEEVWSSNEEEYNKPQPPFGNKSGYDSRTGIYHSLVKLDTKHELPTKLDLNTANFVLSQFPQAGLAEARIAFIDSSTNRSVSYAELRQSIYSLASALFHGLEVRKGDVVLVLSPNSILYSAICLAVLSVGAVLTTANPINTASEIAKQVRDSGAKLAISAPEELHKLIPTGVPTILTSRSSDGKMLSVEELIEGCYGSPEFLPHVPVAQSDTAAILYSSGTTGVSKGVVLTHANLISIMRLLWWSADVSASQDDVFLAFIPMFHVYGLVFFGFGLLCVGVTTILMQKFDLPAMLDAIQKHKVNNLPAVPPVILALVKHASKIRCDLSSLRRVGSGAAPLSKEVAQDFRRMFPWTELRQGYGLTESCGGATFFASDKDAKAHPDACGRLLPTFCAKVVDTETGKPLPPNKEGELWFKSPTIMKGYLGNLEATTATLDSEGWLMTGDLGYIDENGFVYIVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSKLSEDQVIQFVAGQVAPYKKVRRVSFIDTIPKSAAGKILRKDLVSQSKYQLVSKL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01907 571 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Cca02g01907 571 SUPERFAMILY Acetyl-CoA synthetase-like 66 562 - -
Cca02g01907 571 ProSitePatterns Putative AMP-binding domain signature. 217 228 IPR020845 -
Cca02g01907 571 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 19 570 - -
Cca02g01907 571 Gene3D - 465 567 IPR045851 -
Cca02g01907 571 Pfam AMP-binding enzyme C-terminal domain 478 553 IPR025110 -
Cca02g01907 571 MobiDBLite consensus disorder prediction 1 16 - -
Cca02g01907 571 MobiDBLite consensus disorder prediction 1 27 - -
Cca02g01907 571 CDD 4CL 46 559 - -
Cca02g01907 571 Gene3D - 42 464 IPR042099 -
Cca02g01907 571 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 570 - -
Cca02g01907 571 Pfam AMP-binding enzyme 70 468 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01907 Cca-Chr2 38443755 38446202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01907 28 567 Monolignol Biosynthesis Gene Families AT1G20500 44.404 6.29e-157 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01907 K10526 - gmx:100783104 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01907 02 38443755 38446202 Cca02g01907 02 38443755 38446202 ECH