Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01905 ATGGCGCGCCTCGGTCCCGGCTTTCGATTCCACCCCACCGACGAAGAGCTCGTCGTCTTCTACCTCAAGCGCAAGATCACCGGAAACCTCTCCCGCTACGACCACATCGCCGTCGTCGACGTCTACAAGCTCGAGCCCTGGGACCTTCCCTCCATGTCGAAGCTCAAGACCAAGGACTTGGAATGGTACTTCTTCAGCATCCTCGACCGCAAGTACGGTAACGGTTCCCGGACCAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACCGGGAAAGACCGCGCCGTCAACCAGGGCGACCGAACCGTCGGAATGAAGAAAACCCTTGTTTACCACATCGGCCGGGCCCCGCATGGCCGTCGGACCAATTGGGTCATGCACGAGTATAAGCTTCTCGAGGAAGAATTGGCACGTGCTGGGACTGTGCAGGATATGTTTGTGCTGTGTAGGATTTTCGAGAAGAGTGGTGCGGGGCCCAAGAACGGGGCCAAGTATGGTGCTCCCTTGGACGAGAAGGAGTGGGATGAGGAAGTCGAGGAGGAGAAGAAGGTGGTTCCTTTGCAGAGTGCTGAGAATGTTGCTGAGAATGTCGTGCCTGTGGCTCCCTTGCCGGTTGCCGATGATGGGGTTTTCGATGCTGGGGCTTATGTTGAAACCGACGACCTTGACAGGGAGCTTGATTTTAGTGATATAATTGGGACTGTTACTTTTCCGTCGTGGAACTATCATTACGGGGAGTGTAGTACCCAAGCTGAACATTCCCAAGTATCCACCAAGGATCAGGAGCCATTGGCAAGCACTTTTGGAATTTCTGTGCCTGAAAATGGCCAGCCTCTTGATATGACTGAGCAACATGTTGTGGTCACAGATTCAGTGAAAGATGAACACAGTGGTGAGCCAAGCAATTTTGAGAATCTTCTGAATTTCAATGATCCAGGGAATGATATGGATCTGGATCTATTATACATGGATGCCATGGAGAAGCTTCCGTTGCTTGATGAGGGTTCATTCTTGGAAACCAATGATCTTGCAGTTGTGAATGAGGGTGATCCTATCAAGGACGATCCTTCTGGGGATGCTATGCTAGATGAATATCTTGCATTACCTGATGATGATATTTGCAAGTATATATCTTTTGATTCTCAGATTTCTGAGAGTGAAAACTCTATTCCCAATCAAGGACCACTCTTCACTCAGCAGAATGTGGAGGGAGAAAACACTGATAATGATGTTGTAAGTAAACTTTATTCTGAAGCAAAAACTAGCAATGAAGCGTCTTCAGTGCAGAATAAACAGGAGAAATTAGTACCAGGAAGTACAAATTCATTTGTTGAGCAGGCCTATGGATGGTTGGCCAACATACCTGCTGCTCCTGCACATGCTTTGGAGTTTCCTGCTAAGGAGATTGCTCTTGGGCTTCATCCTGCAGCTCAGTCTTCCAGTCCTGCTCATATAACTACAGGTATGATCAGCATAACCAACGTTACTTTTAGAGGCAATGCGATGGATTGGACAATGGGCAAAAATGGAGGGTTTAACACCGTAGTATCTACTGGGTTTTCTCAACCGGATGTGGATTCTGGCTTGGTCTCTAGCAAGACCGCATTTGTGTTGTCGCATGGCTGGATTTTCTTGACGGGCTTCTCAGTTCTTATTCTTTCACTAAGTTGCAAGATTGGAAGCATCATGTATACTGGTAAATGA 1704 0.4842 MARLGPGFRFHPTDEELVVFYLKRKITGNLSRYDHIAVVDVYKLEPWDLPSMSKLKTKDLEWYFFSILDRKYGNGSRTNRATEKGYWKTTGKDRAVNQGDRTVGMKKTLVYHIGRAPHGRRTNWVMHEYKLLEEELARAGTVQDMFVLCRIFEKSGAGPKNGAKYGAPLDEKEWDEEVEEEKKVVPLQSAENVAENVVPVAPLPVADDGVFDAGAYVETDDLDRELDFSDIIGTVTFPSWNYHYGECSTQAEHSQVSTKDQEPLASTFGISVPENGQPLDMTEQHVVVTDSVKDEHSGEPSNFENLLNFNDPGNDMDLDLLYMDAMEKLPLLDEGSFLETNDLAVVNEGDPIKDDPSGDAMLDEYLALPDDDICKYISFDSQISESENSIPNQGPLFTQQNVEGENTDNDVVSKLYSEAKTSNEASSVQNKQEKLVPGSTNSFVEQAYGWLANIPAAPAHALEFPAKEIALGLHPAAQSSSPAHITTGMISITNVTFRGNAMDWTMGKNGGFNTVVSTGFSQPDVDSGLVSSKTAFVLSHGWIFLTGFSVLILSLSCKIGSIMYTGK 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01905 567 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 562 - -
Cca02g01905 567 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Cca02g01905 567 Pfam No apical meristem (NAM) protein 6 131 IPR003441 GO:0003677|GO:0006355
Cca02g01905 567 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 4 562 - -
Cca02g01905 567 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Cca02g01905 567 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01905 Cca-Chr2 38416457 38419790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01905 4 563 NAC Transcription Factor Family AT5G04410 38.926 4.71e-110 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca02g01905 NAM 9.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01905 - - gmx:100808260 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01905 02 38416457 38419790 Cca02g01905 02 38416457 38419790 ECH