Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01904 ATGGGTCGCGAAAGTGTGTTCCTTCCAACCACTGCCTCCACCACAGTGAACCCAGTGGCAGCACCACCTACCTCCCTTGCTCCTGGCTTCAGGTTCCACCCAACTGATGAGGAACTTGTTATTTACTACCTCAAACGCAAGGTTTCAGGAAAACCTTTTAGATTCGATGCTATATCTGAGGTTGACATATACAGGAGCGAGCCCGGGGACCTGGCAGATAAGTCAAGGCTGAAGACCAGGGACCAGGAGTGGTATTTTTTCAGTGCATTGGACAAGAAATATGGGAATGGGGGGAGGATGAACAGGGCTACGGGCAAAGGGTATTGGAAAGCCACTGGGAATGATCGACAAGTGAAGCATGAAGAAAGGGTTGTGGGGTTGAAGAAAACTTTGGTGTTTCATAGTGGACGGGCTCCGGATGGCAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTACTGAAAAGGAGATGGAGAGGATTGGGACTGGATCCTCTCAGCCCCAGGATGCGTATGTTTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCGAATGGGCAACGATATGCTCCCTTCATTGAAGAAGAATGGGATGATGCAGCGGGAATGGTTCCAGGGGTAGAGCCTGTGGATAATGGCTATGTTGCCCACCAACCGCGTGTTGAAGGAAATGGTGTTTTATGCACTGAAGTTGTACAGGACACTCAATCTATGAATAAAGCTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTGTGCAAGAGGGAAAGCATGGCTGAGTATCCATCGCCTGAACAGGATGATAATAATTGTAAGCATGTGGATGAGGATCCATCACCTCAAACAGATAACCCAAAGCCTTTCTCTCAAATATACAAACGAAGGCGGCATAACTTGAACTCCAACCACTCTAATGTTTCTGGGGATGCAATCCAAGGCAGCCAGGATCTGTGCTCATCCACAATAAGCACCAATGCATCGACACTCTCGACCACCACTGCAGCTGCCACAACTACGAATACTGTGCCAAAAAAACATTTTCTGTCTGCATTGGTGGAGTATTCCCTGCTAGAATCCCTTGAATCAAAGGAAAGCCTAGCTTCAATTAAGACACCAGATTTTGACACCCAAAATTTAGAATCATCCATGCCTCCAAATTGTGCAAAGTTCATCAAACAGTTGCAGAGTGAGATGCAGAAGCTTTCGGTTGAAAAAGAGACGATGAGGTTTGAGATGATGAGCGCACAGGCGACGATTAACATCCTCCAGTCTCGTGTGGACATTCTGAGCAAAGAAAATGAGGAGTTGAAGAGGTTGGTCCAAAATCCTTAG 1356 0.4624 MGRESVFLPTTASTTVNPVAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAISEVDIYRSEPGDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATGKGYWKATGNDRQVKHEERVVGLKKTLVFHSGRAPDGKRTNWVMHEYRLTEKEMERIGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDAAGMVPGVEPVDNGYVAHQPRVEGNGVLCTEVVQDTQSMNKAPFDVNKLPIETQNLLAVCKRESMAEYPSPEQDDNNCKHVDEDPSPQTDNPKPFSQIYKRRRHNLNSNHSNVSGDAIQGSQDLCSSTISTNASTLSTTTAAATTTNTVPKKHFLSALVEYSLLESLESKESLASIKTPDFDTQNLESSMPPNCAKFIKQLQSEMQKLSVEKETMRFEMMSAQATINILQSRVDILSKENEELKRLVQNP 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01904 451 ProSiteProfiles NAC domain profile. 26 180 IPR003441 GO:0003677|GO:0006355
Cca02g01904 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 449 - -
Cca02g01904 451 Gene3D NAC domain 35 183 IPR036093 GO:0003677|GO:0006355
Cca02g01904 451 MobiDBLite consensus disorder prediction 268 288 - -
Cca02g01904 451 MobiDBLite consensus disorder prediction 266 296 - -
Cca02g01904 451 SUPERFAMILY NAC domain 18 181 IPR036093 GO:0003677|GO:0006355
Cca02g01904 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 18 449 - -
Cca02g01904 451 Pfam No apical meristem (NAM) protein 28 153 IPR003441 GO:0003677|GO:0006355
Cca02g01904 451 Coils Coil 399 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01904 Cca-Chr2 38397251 38406921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01904 1 446 NAC Transcription Factor Family AT3G10480 43.542 2.15e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca02g01904 NAM 2.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01904 - - ccaj:109805026 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01904 02 38397251 38406921 Cca02g01904 02 38397251 38406921 ECH