Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01901 ATGGAAGCACCAGAGGAACTCAAAGATCACACCAACATTCTCAAAGGCAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATCCCCTTCTCCATCACCGCCAATTCCTCTACAGGAGGAGATGGTGATAGagaagaagaagaagaagaTTGcaacaacaacaatcttcgtattaataacaacaacaataacaacaacaacaaTAGTCAGAGCTCCCCCACAACTTCCTCGGCGGGGTTACAGGACAGCACAGATGAAGAGGAGGATATGGCGAATTGCCTTATCCTCCTAGCACAAGGGCAGTCCCGGGAACCGCAGCGTCTGCCCGCCGAGGAAGACGGGGGCATGAGCTACGCCAAGTACAGCAGTAGGAAATTCTTGGAAGCGGCTACGTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGCAACAGAACTTTCCCTTCGTTTCAAGCACTTGGAGGCCACAGGGCTAGTCACAAGAAGCCTAAGGCAATGATGGGAATTGGCCAAGAGAAGAAGCACCAACTCCTTTTGTCATCAGATGAGGAAGAGTTTCAATTCAAGACCAACAAGTCACCGTTCTCCCTTCAGCTCAATAACAACAATTCAAAGGGGAATTTGTATACAAGCAACAACAACAAGTCCAAGGTGCACGAGTGCTCCATCTGTGGTGCTGAATTCACATCAGGACAGGCACTTGGAGGTCACATGAGACGCCACCGTGCACCGGTCGGAACCGCCATCCCTGCCGCCGCCACCACTCTCTCCTTCACCCCATTGCCTTTGGAACCGGAAGAAGATCACCCCAGGAAGAAAAGGAATGTCTTGAATTTGGATTTGGATCTCAACCTTCCTGCTCCAGAAGATGATCAAAGAGAATCCAAGTTTGCCTTCGCATCCAAGCAACAACAACAACATGGCCAGAaacaacaacaacaacaacaacaacaaACAAGTCTTGTCTTCCCCGCACCAGCTTTGGTGGATTGTCATTATTAA 1014 0.4556 MEAPEELKDHTNILKGKRTKRVRPQSPIPFSITANSSTGGDGDREEEEEDCNNNNLRINNNNNNNNNNSQSSPTTSSAGLQDSTDEEEDMANCLILLAQGQSREPQRLPAEEDGGMSYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMMGIGQEKKHQLLLSSDEEEFQFKTNKSPFSLQLNNNNSKGNLYTSNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTAIPAAATTLSFTPLPLEPEEDHPRKKRNVLNLDLDLNLPAPEDDQRESKFAFASKQQQQHGQKQQQQQQQQTSLVFPAPALVDCHY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01901 337 Gene3D Classic Zinc Finger 204 256 - -
Cca02g01901 337 Gene3D Classic Zinc Finger 120 200 - -
Cca02g01901 337 SMART c2h2final6 142 164 IPR013087 -
Cca02g01901 337 SMART c2h2final6 223 245 IPR013087 -
Cca02g01901 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 245 IPR013087 -
Cca02g01901 337 MobiDBLite consensus disorder prediction 54 81 - -
Cca02g01901 337 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 8 337 - -
Cca02g01901 337 MobiDBLite consensus disorder prediction 1 87 - -
Cca02g01901 337 MobiDBLite consensus disorder prediction 288 325 - -
Cca02g01901 337 Pfam C2H2-type zinc finger 141 167 - -
Cca02g01901 337 Pfam C2H2-type zinc finger 222 248 - -
Cca02g01901 337 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Cca02g01901 337 MobiDBLite consensus disorder prediction 302 325 - -
Cca02g01901 337 SUPERFAMILY beta-beta-alpha zinc fingers 141 245 IPR036236 -
Cca02g01901 337 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Cca02g01901 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Cca02g01901 337 PANTHER ZINC FINGER PROTEIN ZAT5 8 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01901 Cca-Chr2 38354083 38355761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01901 1 337 C2H2 Transcription Factor Family AT5G04390 45.257 1.00e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01901 zf-C2H2_6 6.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01901 - - gmx:100799383 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00460 02 9756771 9757766 Cca02g01901 02 38354083 38355761 ECH
Cca03g02415 03 45233182 45234310 Cca02g01901 02 38354083 38355761 ECH
Cca10g00562 10 6108652 6109548 Cca02g01901 02 38354083 38355761 ECH
Cca02g01901 02 38354083 38355761 Cca02g01901 02 38354083 38355761 ECH