Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01896 ATGTTTTCCAGGCTCATACATCCCCATGAACCCCAGGAAGACATGCAGGCTCCTCCCCACCTCGGAGACCCTTGTCTTGTTCTCACTTCTGATCCCAAACCTCGTCTTCGTTGGACCGCTGACCTTCACGAACGCTTCGTTGATGCTGTCACTCAGCTTGGGGGTGCCAGTAAAGCCACTCCAAAAGCAATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCATTTAAAGAGTCATCTTCAGAAGTACAGGCTAGGTAAGCAGTCAGGAAAAGATTCTGAAGAGGGGTGCAAAGATGGGATGTCAGCTTCATATCTTCAAGAAAGCCCTGGTACTGATAACTCATCTCCAAAGTTACCAGCTTCTGATGCAAACGAGGGTCATGAAGTCAAGGAGGAATTAAGAAAGCAGATGGAAGTACAAAGTAAACTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGATGCAGAACGGAGATATATGGGCATGCTTGAGCGAGCGTGTAAGATGTTGGCCGATCAATTTATCGGGGACATAGTTATTGACGCAGATGACCAAAAATTTCAAGGGATGGAAAGCAAAACATCCAGAAGTTCCCTAGTTGATAACGTTGGCTTTTACCCCTCAGCATGTACCGAGGTTGCTGGAATGCATGTTTCAGAAGTACCACATATTCTCCAGCCTCAAGGGGCTGACTGCTCCACTGAAAGTTGCCTAACATCACTTGAGAGTCTGGGGGGGTTGACACTCGAAGGATCTCCCGGCGCTGGATTGAAGAAGAGGATGCTGAGCTTGGACTCGATGGCGGCACCTTTTATCTGGAGTGAAGCCAACATCAGAACTCAAGGAATTAATTTAGCTCAAGTCAATCCTCCAGGAATAACTAGGTATGGCATGTAG 918 0.4706 MFSRLIHPHEPQEDMQAPPHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSEEGCKDGMSASYLQESPGTDNSSPKLPASDANEGHEVKEELRKQMEVQSKLHLLVEAEKHLQIRQDAERRYMGMLERACKMLADQFIGDIVIDADDQKFQGMESKTSRSSLVDNVGFYPSACTEVAGMHVSEVPHILQPQGADCSTESCLTSLESLGGLTLEGSPGAGLKKRMLSLDSMAAPFIWSEANIRTQGINLAQVNPPGITRYGM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01896 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cca02g01896 305 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Cca02g01896 305 MobiDBLite consensus disorder prediction 87 133 - -
Cca02g01896 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 305 IPR044848 GO:0003700
Cca02g01896 305 Pfam MYB-CC type transfactor, LHEQLE motif 131 176 IPR025756 -
Cca02g01896 305 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 305 - -
Cca02g01896 305 MobiDBLite consensus disorder prediction 1 23 - -
Cca02g01896 305 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
Cca02g01896 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Cca02g01896 305 Gene3D - 32 90 - -
Cca02g01896 305 MobiDBLite consensus disorder prediction 107 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01896 Cca-Chr2 38294826 38298878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01896 9 248 G2-like Transcription Factor Family AT3G24120 45.968 2.08e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca02g01896 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01896 - - gmx:100779871 521.161