Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01887 ATGGGGTATCTCATTTTGCTTCTATTTGTTTCTACCTTGTTGCATGCTGCTTCTGCCTTGAACTCTGAAGGGTTGGCTTTGTTGTCCCTCTTGAGAAACTGGACTGTTGTGTCTGTTGACATAAACTCCACGTGGAACCCTTCTGATTCCACTCCATGCTTGTGGGGAGGAGTGCAGTGTGATCATGCCAATAATGTGGTTTCTCTAAACCTCACTAGTTGTTCAATTTTTGGTCAATTAGGACCTGATATTGGACACTTGATTCACTTGCAAACCATAGTTTTATCAGAAAATGATCTGTTTGGAAAAATCCCCCCAGAATTAAACAACTGTACCATGCTTGAGTACTTGAACCTTTCTCTAAACAACTTTAGTGGAGGAATACCTGAGAGCTTCAAAAACTTGCAAAATTTGAAGCTTGTGGACCTTTCATCTAATCTGCTGAATGGTGAAATTCCTGAATCCTTGTTTGAAATTCCTCACTTGGAAGAAGTGTATCTTAACAATAACAGTTTAAGTGGTTCCATTCCCACAAGTATTGGGAATATCACTCAGCTTGTCACACTGGATGTTAATAGTAATCAGCTGTCAGGGACAATTCCCATGTCCATTGGAAATTGTAGTAAATTAGAGTTTCTGTATTTGGAAAGGAATCAATTACATGGAATTATTCCTGAGAGTCTAAATAATCTCAAAAATCTTCAAGAGTTATATCTCGATTATAATAATCTTGAAGGTACTATTCAACTGGGATCTGGAAATTGCAAAATGTTATCTTATTTGAGTCTTTCTTACAATTACTTCAGTGGGGGTATACCATCAAGCTTAGGGAATTGTAGTGGTCTAATAGAGTTTTATGCTGCAGGGAATAAATTAGTTGGCAGTGTACCATCAACCTTAGGCCTCTTGCACAAGCTTTCTCTTCTAATAATTCCAGAGAACCTATTTTCAGGGAAAATACCCCCACAGATTGGTAATTGCAAATCACTGGAAGAGTTGCATTTGAATACTAATGAACTCGAGGGAGAAATTCCTAGTGAATTGGGAAACATGAGTGCACTCCGTGATCTTAGATTATATGAAAACTTTTTGACAGGAGAAATCCCAATTGGGGTATGGAAAATTCAAATCCTTGAGCATGTCCTTGTGTACAATAATAGCCTTTCAGGTGAGCTACCTTTTGAGATGACAGAGCTAAAACATCTTAAGAATATCAGCTTGTTTAACAACAGGTTCTCTGGTGTCATACCTCAAAGCTTAGGAATCAATAGCAGTTTGGTGCTGCTAGACTTCATGTATAATAATTTCACTGGTACCCTCCCACCAAATCTTTGTCATGGAAAGCAACTTGTGAGGCTGAATATGGGTAGCAATCAATTTTATGGCAACATACCTCCTGATGTAGGAAGGTGTACAACTCTTACAAGGGTGAGACTCGAAGGAAACAATTTCACCGGGCCTCTTCCTGATTTTGAAACTAATCCAAATCTCTCTTACATGAGCATCAACAACAACAATATAAGTGGAGCAATTCCATCAAGTTTGGGAAACTGCACAAATCTCTCTCGTTTATATTTATCCATGAATAGCTTATCTGGTCTTGTACCCTCGGAGCTAGGAAACCTTGTGAATCTTCGGACTTTAGATCTTTCTCACAATCATTTGGAAGGTCCTTTGCCACAACAGTTGTCAAACGCTGCCCAAATGACCGAGTTTGATGTCGGATTCAATTCCTTGAATGGTTTGTTTCCATCAAGTTTTCGGAGCTGGACAACACTAACTACTTTAGTTCTCTCAGAGAATCATTTTAGTGGTGGTATCCCAGCTTTCTTGTCAGAATTTAAAAGGCTTAATGAGTTACGGCTTGGTGGAAATATGTTTGGAGGAAATATTCCTAAATCAATTGGAGAACTGGTGAATTTGATGTATGAGCTAAATCTAAGTGCTAATGGATTGACAGGTGAGCTTCCTAGGGAGATTGGAAACCTGAAGAGTCTGCTAAAACTGGATCTATCTTGGAACAATTTAACTGGAAGTATACAAGTTCTTAATGAGCTCACTTCATTATCTGAATTCAACATCTCATTTAATTCTTTTGAAGGTACTGTGCCACAACAGCTAATAATGATACCAAATTCTTATTCATCATTTTTGGGCAATCCTGGCCTATGTGCCAGTTTTTCATCAGATGGCTCAAATTTCACTGAGAGGAGCTATTTAAGGCCATGTGACACAAATTCGAAAAATCTCGGTAAAGTTGCAACTGTGATGATAGCACTTGGATCCTCAATATTTTTTGTTCTGCTGCTGGGGTTAATCTATATATTCTTTATCAGAAAAATTAAGCAGGAAGCCATAATCACTGAGAAAGATGATTCTCCATCCCTTCTCAGTAAAGTGATGGAAGCTACGGAAAATCTAAATGATCAATATATTATTGGCAAAGGTGCTCAAGGTGTTGTTTACAAAGCAGCACTAGGTCCAGACAATATTTTGGCAATCAAGAAGTTTGTATTTGCTGACGATGAAGGGAAAAGCTCAAGCATGACCAGGGAAATTCTAACCCTTGGAAAGATAAGGCATCGAAATTTGGTTAAATTGGAAGGGTGCTGGTTGAGAGAAAACTATGGTCTAATTTCATACAGATACATGCCAAATGGAAGTCTTCATGATGCTTTGCATGGCAGGAATCCACCACATTCCttagaatggaatgtcaggcataagatagctgttggagttgctcatgggttggcttatctccattatgactgtgatcctgtcatagtgcacagagacatcaaaacaagcaatgtacttctagattctgaaatggagcctcatattaccgattttggtattgccaagctcttagATCAGCCTTCTACCTCAACACAGTCAGCATCTGTTACTGGCACACCTGGTTATATAGCACCAGAGAATGCTTATACGACAACTATGGGTAAGGAATCTGATGTATACAGTTATGGGGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAAGCATTGGATCCATCATTTATGGAAGGAACGGATGTAGTCAATTGGGCTAGATCTTTGTGGGAGGAAATGGGAGTTGTTGATGAAATTGTTGATTCAGGGCTTGCTGGTGAAATTTCAAATTATGATGTGATGAAACAAGTTACTAAGGTGCTTTTGATGGCTTTGAGATGCACTGAAAAGGATCCACGTAGGAGACCTACTATGAGGGATGTTATCAAGCATTTGTAG 3252 0.3672 MGYLILLLFVSTLLHAASALNSEGLALLSLLRNWTVVSVDINSTWNPSDSTPCLWGGVQCDHANNVVSLNLTSCSIFGQLGPDIGHLIHLQTIVLSENDLFGKIPPELNNCTMLEYLNLSLNNFSGGIPESFKNLQNLKLVDLSSNLLNGEIPESLFEIPHLEEVYLNNNSLSGSIPTSIGNITQLVTLDVNSNQLSGTIPMSIGNCSKLEFLYLERNQLHGIIPESLNNLKNLQELYLDYNNLEGTIQLGSGNCKMLSYLSLSYNYFSGGIPSSLGNCSGLIEFYAAGNKLVGSVPSTLGLLHKLSLLIIPENLFSGKIPPQIGNCKSLEELHLNTNELEGEIPSELGNMSALRDLRLYENFLTGEIPIGVWKIQILEHVLVYNNSLSGELPFEMTELKHLKNISLFNNRFSGVIPQSLGINSSLVLLDFMYNNFTGTLPPNLCHGKQLVRLNMGSNQFYGNIPPDVGRCTTLTRVRLEGNNFTGPLPDFETNPNLSYMSINNNNISGAIPSSLGNCTNLSRLYLSMNSLSGLVPSELGNLVNLRTLDLSHNHLEGPLPQQLSNAAQMTEFDVGFNSLNGLFPSSFRSWTTLTTLVLSENHFSGGIPAFLSEFKRLNELRLGGNMFGGNIPKSIGELVNLMYELNLSANGLTGELPREIGNLKSLLKLDLSWNNLTGSIQVLNELTSLSEFNISFNSFEGTVPQQLIMIPNSYSSFLGNPGLCASFSSDGSNFTERSYLRPCDTNSKNLGKVATVMIALGSSIFFVLLLGLIYIFFIRKIKQEAIITEKDDSPSLLSKVMEATENLNDQYIIGKGAQGVVYKAALGPDNILAIKKFVFADDEGKSSSMTREILTLGKIRHRNLVKLEGCWLRENYGLISYRYMPNGSLHDALHGRNPPHSLEWNVRHKIAVGVAHGLAYLHYDCDPVIVHRDIKTSNVLLDSEMEPHITDFGIAKLLDQPSTSTQSASVTGTPGYIAPENAYTTTMGKESDVYSYGVVLLELISRKKALDPSFMEGTDVVNWARSLWEEMGVVDEIVDSGLAGEISNYDVMKQVTKVLLMALRCTEKDPRRRPTMRDVIKHL 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01887 1083 Gene3D Phosphorylase Kinase; domain 1 777 883 - -
Cca02g01887 1083 PRINTS Leucine-rich repeat signature 186 199 - -
Cca02g01887 1083 PRINTS Leucine-rich repeat signature 542 555 - -
Cca02g01887 1083 Pfam Protein kinase domain 811 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01887 1083 Gene3D Ribonuclease Inhibitor 181 252 IPR032675 -
Cca02g01887 1083 SUPERFAMILY Protein kinase-like (PK-like) 796 1083 IPR011009 -
Cca02g01887 1083 SUPERFAMILY L domain-like 417 728 - -
Cca02g01887 1083 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Cca02g01887 1083 Pfam Leucine rich repeat 495 555 IPR001611 GO:0005515
Cca02g01887 1083 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Cca02g01887 1083 Pfam Leucine rich repeat 114 172 IPR001611 GO:0005515
Cca02g01887 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Cca02g01887 1083 SUPERFAMILY RNI-like 152 461 - -
Cca02g01887 1083 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1082 - -
Cca02g01887 1083 ProSiteProfiles Protein kinase domain profile. 807 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01887 1083 SMART LRR_typ_2 208 230 IPR003591 -
Cca02g01887 1083 SMART LRR_typ_2 183 207 IPR003591 -
Cca02g01887 1083 SMART LRR_typ_2 87 111 IPR003591 -
Cca02g01887 1083 SMART LRR_typ_2 231 255 IPR003591 -
Cca02g01887 1083 SMART LRR_typ_2 518 541 IPR003591 -
Cca02g01887 1083 SMART LRR_typ_2 135 159 IPR003591 -
Cca02g01887 1083 SMART LRR_typ_2 663 686 IPR003591 -
Cca02g01887 1083 SMART LRR_typ_2 542 566 IPR003591 -
Cca02g01887 1083 SMART LRR_typ_2 327 351 IPR003591 -
Cca02g01887 1083 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Cca02g01887 1083 Gene3D Ribonuclease Inhibitor 253 346 IPR032675 -
Cca02g01887 1083 SUPERFAMILY L domain-like 49 198 - -
Cca02g01887 1083 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 2 1082 - -
Cca02g01887 1083 SMART serkin_6 807 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01887 1083 Gene3D Transferase(Phosphotransferase) domain 1 884 1083 - -
Cca02g01887 1083 Gene3D Ribonuclease Inhibitor 347 425 IPR032675 -
Cca02g01887 1083 Gene3D Ribonuclease Inhibitor 20 178 IPR032675 -
Cca02g01887 1083 Gene3D Ribonuclease Inhibitor 426 732 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01887 Cca-Chr2 38216336 38220130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01887 11 1083 Receptor kinase-like Gene Family AT1G73080 51.460 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca02g01887 Pkinase 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01887 - - gmx:100802056 1757.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01887 02 38216336 38220130 Cca02g01887 02 38216336 38220130 ECH