Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01886 ATGAAGAGAGTCTTCGGTGTCAAGAAGAACAAGGATCCTCCTCCTACCATTCAGGATGCTAACGATAGGATTACTAAACGAGGTGATACGGTGGAAGAAAAGATTAAGAAGCTTGATGTGGAGCTTAGTAGATATAAAGAGCAGATTAAGAAAACTAGACCTGGTCCGGCACAGGAAGCTATTAAAGCTAGAGCCATGAGAGTTCTTAAGCAAAAACGAATGTATGAGGGCCAGCGTGACATGCTGTATAATCAGACATTCAATCTTGATCAAGTTCAATTTGCTTCTGAGGGCATTAAAGATGCTCAACAAACTATGTCAGCTTTGAAGACTGCCAACAAGGAGTTGAAGGGAATGATGAAAACTGTGAAGATTCAAGACATTGATAACTTGCAAGATGAGATGATGGACCTCATGGATGTAAGTAACGAAATCCAAGAGACTCTGGGTAGAAGCTATAATGTGCCTGATGACATTGATGAGGATGATCTTATGGGTGAACTTGATGCGCTTGAAGCAGACATGGGAAATGAGACTGAAGCTGATGGGGTCCCATCATACCTCCAACCTGATAAAGAATCTGATTTGGAGGCAGAGCTTAACTTACCATCAGCTCCATCAGGACAAACAGCAGTGCCCCCTGGCAGATCCAATGCCCAAACTGAGGATGAATTGGGTTTACCTGCTGTTCCTCGGGCATCCTTACGCGACTTAGTAGTTAGTACCTTTGTTTTCCGTTGTAATAAGCCTTGTGGAAGCATCTTTGATATTTGTATGAAGCTTATGATATGGAAAAGGAAAAGGAAAATATCGCTGGAAATTTGTGGAAAGCTTGGAACCTATCCAATGAACTACAGCAGCAACAAGGACGAGAATGATTTTGACTCAAGTGGGTTCACATATGGCGTAGCCTTTGTAATTGGGTTGGTCTTCTTACTTGTGACGGTGGCTTTTGCATGTGTGAGGCTTCGCATGGCACGTGGTCCTAACATGCTCAATATTTTGTCTGGTATTCCACCATCACGTCacgctccagcagaagatgattcagctgaacaaggcctacgccttcatcacatTGACACAAGTTTTGAAAGCTATCCCAAGCTTCTTTACTCTCAAGTTGAGAAAGAGAAGAAGGGCTCAAGCTCTCTTTCTTCTAGCTGCCCCATATGCTTAGGGGACTACAAAGAAACTGACATGTTGAGGCTTCATTAA 1218 0.4089 MKRVFGVKKNKDPPPTIQDANDRITKRGDTVEEKIKKLDVELSRYKEQIKKTRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVQFASEGIKDAQQTMSALKTANKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDDLMGELDALEADMGNETEADGVPSYLQPDKESDLEAELNLPSAPSGQTAVPPGRSNAQTEDELGLPAVPRASLRDLVVSTFVFRCNKPCGSIFDICMKLMIWKRKRKISLEICGKLGTYPMNYSSNKDENDFDSSGFTYGVAFVIGLVFLLVTVAFACVRLRMARGPNMLNILSGIPPSRHAPAEDDSAEQGLRLHHIDTSFESYPKLLYSQVEKEKKGSSSLSSSCPICLGDYKETDMLRLH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01886 405 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g01886 405 Gene3D - 123 176 - -
Cca02g01886 405 Coils Coil 128 148 - -
Cca02g01886 405 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 232 IPR005024 GO:0007034
Cca02g01886 405 Pfam Snf7 13 209 IPR005024 GO:0007034
Cca02g01886 405 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 60.1 1 232 - -
Cca02g01886 405 Coils Coil 28 48 - -
Cca02g01886 405 MobiDBLite consensus disorder prediction 202 224 - -
Cca02g01886 405 MobiDBLite consensus disorder prediction 203 217 - -
Cca02g01886 405 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01886 Cca-Chr2 38202258 38212100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01886 285 404 C3H Transcription Factor Family AT5G06490 27.206 5.18e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01886 K12198 - gmx:100527083 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01886 02 38202258 38212100 Cca02g01886 02 38202258 38212100 ECH