Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01880 ATGCCGGCCATCATAGCTACTTCCAGCCTCATGGTCTTCTCTGAATTTTCCTCCATAAATTCCACCCCTAAATGGCTTCAACATTGGTTGAAGAAAAGAAGGGACGGAGGAACTAAGATGGCAGGGAACTTCAAATTCACAATGGACCAGAAGGATATTGTTAGATTCTTGACTACATCTATTGATAGTTTCATTCAAGATCGGTTAATCAACAAAGAACAAAGAACTCAGCACAAAGAACAGTGTGCAGAAAGGTTAGCTGCTGAAGATGGAAGTTGTGACAAAGACAGTGAGGTGGAATACTCTGATCAAGCAGTGTTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAACATGGAAACTAAGCTTGCAAGGCTAGATTATGCTGAAAAGATGTTGCAAGTGTGTGCAATGTTGAATCCCGAGCAAAAAACTGCTGGAGTGCCAAACTACTACCTCTCAGCTTGGGCACACCTAAACCTATCCTACTTGTGGAAGTTGAGGAACAACATTCAAAATTGTGTTTTTCATGCTCTTGAGATGTTTATCGTTGATCCTTTTTTCTCTCGGATCGATTTCGCTCCTGAACTCTGGAAAAACCTGTTTCTTCCACACATGAGCTCAATTGTGGGGTGGTATTCTGAGGAGAGGCATAGGCTTATGATGGAAGTGATACCTGACTCTTCTGATCTGTCCTTTACAGCTGATTTTGATCAATTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCACATCAATTAGAAAAATTGCAAAAGCTGGAGCAGCTTTATGGAGAATCATTGGATGAGAACACGCGGCTGTACGCAAAATATTATAAAGATTGCATGAATTCTGATTCCACTTCAGGCAAGAAGGTGGCTCCTATGTTGCCTATTGCTGAGCCACCAATGACTCCTTTGCATGAGTTGAGCCGGTCTGTTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCTGGGTTTTCTTTGACATCAAGATCTAAAGACGGTGAAAATGAAACAATCAGAGAGAATTCCACTTCCAGCCATTCAAAGGTGGAGAAATCATCCATATGGGGTGCAAAGGAGAGCATCATCGAAGAGAATGAAGATAATTCAGATTCTGAGGTTGATGATGCTTCTGTGGATTCAGATAACAAAAACAATATTTTCTCGCTGGGAATGAAGATGGTCAAGGATGAGGATATTCAGCCAAAGGTACATTTGTCATACCAGAAGAATCAAATCCATTCTCCTAATATCTTCTCTCCCTTGGATTCCCCAAGAACTGGTCCAAATAATTCATCTACAAACCCTGATACACACAGTAAAAGAGAACCCAAGTATCTTCGCTTACTGTCTAACCGTTATAGGGACTCAACTATTTCTGACTCTTTATCTCTGGACAAGAACACTGATCATACTTTCAACTCTGATAACGAAGTAATGGTCTTGAAGAATATTCAGAGGAAAAACAATAACCAAACACTAACTATGAATCATGACAATGAGAATAGCCTAGGACTAAATGACAGTTCCCTTTGTGAAAGTGATGAAGGAAATCTAAGTGGCATATCGTTGCAAAAATTAGAGAAGCTGACGATTGGATCAAAACCACCAAAAGATTTTGTTTGCCCAATCACAAGTCAGATATTTTGTGATCCTGTCACCCTTGAAACTGGTCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGCTCAGAACAGGAAACACAACATGTCCCATCACACGACAGCCTCTATCTGCAAATACATTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACATCATGGAGAGAACAGAATCCTGAACTAGCTCAAGAATTCTCAAATTCTAATACACCAAGGGGTTCTTCCTGTTCTCCATCTGCAAAAGACTTTTCAATGCTCTCCGTTATGCAAAGAACAACTGATTCACCAAGTCATAAGAGCAAAGAAAATTATACTAGACAAAGGAGCAATAGATTTATACGAGTAGCAGTTGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGCAGTTGAAACAATTATGAATTCGTTGAAACCTTACATTTCAAGTCTTTGTACATCAGAAAACTTGCAAGAATGTGAACAAGCTGTATTGGAAATAGCAAGATTATGGAATGATTCAAAGACTGATCCTCAGATTCATGCTTATTTATCAAAGCCAACTATCGTAAGTGGTTTGGTGGAAATACTTTCAGCTTCTCTAAATAGAGAAGTTTTGAGAACATCAATTTATATTCTTTCTGAGCTAATATTTTTTGATGAAAGTGTTGGAGAAACACTTAACAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGCCTGAGGCTGCTCTTCTTATTTACCAACTAAGGCCAGTTTATGCTCAGCTTTCAGCACATGAACTTATACCATCTCTTGTGCAAGTGATTCAGAACAACAATGAGGCGTCAGATGATTTTCAGTTAGTTATAGACCCCAAAGATGCTGCCATAGCAATTCTTGAGCAAATTTTAGTAGGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCCGAAAATGGAATTCCAGCCTTAGCAAAGTATTTGGAGAGGATGGAGGGAAGGAGGTCTGTTGTATCCATACTTTTGTGTTGTATGCAAGCTGATAAAGGTTGCAAGAGCTTGATAGCAAACAGAATTGAATTGTCTCCTATTCTTGAATTATTTCATGCTGGAAATGATAGTGTGAGAGGCACCTGTGTTGAGTTTCTCTCAGAACTGGTTCAATTGAATAGAAGGACAGTCTGCAACCAGATTTTACAGACAATCAAGGATGAAGGAGCATTTAGTACGATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCCAGTCTTCTTCTTCAGATTGATCTTCTGGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTAATAGAAGCACTCTGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTTTGGACGCTTTACTATTTCTTATTGGACATATAACTTCCTCGGGAAAGTCATATACTGAAGCTTGGTTGCTCAAGATTGCAGGGTTTGATCAACCTTACAATGCTTTAATTAAAGCCGAGCAGTTGGGACAGTATGACGATGATTCAATGGAAACAATGGAGGATGAAAAAATTGCTATGAACTCTTGGCAGAAAAGGGTAGCTTTTGTACTCTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCCTTAAATATGGCAAAATCTTGCCTTGTTCTTGTCACATGGCTCACACACATGCTCTCTACTCTTCCTGATACCGGCATAAAGGATGTTGCTCGCAAATCCTTGCTTGATGAACTTATAAATGTTCTGCACTCATCCAAGAACTTGGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAAACTTTCATCAGTGATCCAATTGCTCTCGAAGCACTGAGAGCTTATGCTAAAAGCATCTATAGAACCATGAGGAAGCTGAAGAAATATTCAGTTGTAGCAGTTGATATTATGAAAGCCTTACTGAACTTAAATTCTGTTGACGTGACAGAGTTGTGGAGTTGTAAAGAAGTTGTTGAGCTAGATTTGAGCGCAAATGGAGAGGTGCTTTCTTTGCTTTATATGAATGGTCAAGTCTTGAGTGGTCACTCTGATGGATCTATCAAGGTATGGGATGCAAGAAAGAGAATACCGAGAGTGATTCAAGAAATTCATGAGCACACAAAAGCTGTAACATCTCTCTGTTCTTCAGATGATAGGCTATACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGAAAATCAAACCAGATGAGATTAAATGTATAGATGTCCATGACGTTAAGGATCCAGTGTATGAGCTGACAGCCAATGCTAAATTGGCATGCTATGTATCTCAAGGAACTGGTATGTTTCAGGTTTTTAATTGGTCAGAAGCTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTTGCTGTTGCTGGGGACAAACTGTATTGTGGCTGCTCTGGTTACAGCATCCAGGAGGTTGACTTGTCCAAATTTACATCAAACTCATTCTTCTCTGGTACAAGAAAGTTGTTGGGAAAACAAACCATACGCTCCCTTCAAATTCATGATGGTTTCCTCTTTGCTTGTGGTTCTTGTGTTGATGCAACTGCAGGAAAGATATTTTCACTTTCCACCAAAATGGTGGTGGGATCACTCTCAACTGGACTTGACATCCATCGCATAGCCATCAACAGTGACTTCATATTTGCTGGCACAAAATTTGGCACCATTGAGGTTTGGCTAAAAGATAAGTTCACCCGGGTTGCTTCAATCAAAATGGCTGGTGGTCACACAAAGATCACATCATTAGTATCAGATGCAGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTGGATTAA 4575 0.3963 MPAIIATSSLMVFSEFSSINSTPKWLQHWLKKRRDGGTKMAGNFKFTMDQKDIVRFLTTSIDSFIQDRLINKEQRTQHKEQCAERLAAEDGSCDKDSEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPEQKTAGVPNYYLSAWAHLNLSYLWKLRNNIQNCVFHALEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLVFSMRPHQLEKLQKLEQLYGESLDENTRLYAKYYKDCMNSDSTSGKKVAPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSAGFSLTSRSKDGENETIRENSTSSHSKVEKSSIWGAKESIIEENEDNSDSEVDDASVDSDNKNNIFSLGMKMVKDEDIQPKVHLSYQKNQIHSPNIFSPLDSPRTGPNNSSTNPDTHSKREPKYLRLLSNRYRDSTISDSLSLDKNTDHTFNSDNEVMVLKNIQRKNNNQTLTMNHDNENSLGLNDSSLCESDEGNLSGISLQKLEKLTIGSKPPKDFVCPITSQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANTLPKTNYVLKRLITSWREQNPELAQEFSNSNTPRGSSCSPSAKDFSMLSVMQRTTDSPSHKSKENYTRQRSNRFIRVAVATSPTSVLSQAAVETIMNSLKPYISSLCTSENLQECEQAVLEIARLWNDSKTDPQIHAYLSKPTIVSGLVEILSASLNREVLRTSIYILSELIFFDESVGETLNSVDSDFDCLATLLKNGLPEAALLIYQLRPVYAQLSAHELIPSLVQVIQNNNEASDDFQLVIDPKDAAIAILEQILVGGDEYSRSLNALSVISENGIPALAKYLERMEGRRSVVSILLCCMQADKGCKSLIANRIELSPILELFHAGNDSVRGTCVEFLSELVQLNRRTVCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHITSSGKSYTEAWLLKIAGFDQPYNALIKAEQLGQYDDDSMETMEDEKIAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLNMAKSCLVLVTWLTHMLSTLPDTGIKDVARKSLLDELINVLHSSKNLEEKILATLALKTFISDPIALEALRAYAKSIYRTMRKLKKYSVVAVDIMKALLNLNSVDVTELWSCKEVVELDLSANGEVLSLLYMNGQVLSGHSDGSIKVWDARKRIPRVIQEIHEHTKAVTSLCSSDDRLYSGSLDKTIRVWKIKPDEIKCIDVHDVKDPVYELTANAKLACYVSQGTGMFQVFNWSEAPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKFTSNSFFSGTRKLLGKQTIRSLQIHDGFLFACGSCVDATAGKIFSLSTKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01880 1524 CDD RING-Ubox_PUB 552 594 IPR045210 -
Cca02g01880 1524 MobiDBLite consensus disorder prediction 423 457 - -
Cca02g01880 1524 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 40 1524 - -
Cca02g01880 1524 Gene3D - 1219 1524 IPR015943 GO:0005515
Cca02g01880 1524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 536 630 IPR013083 -
Cca02g01880 1524 SUPERFAMILY WD40 repeat-like 1255 1523 IPR036322 GO:0005515
Cca02g01880 1524 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 40 1524 - -
Cca02g01880 1524 Pfam U-box domain 549 619 IPR003613 GO:0004842|GO:0016567
Cca02g01880 1524 ProSiteProfiles Trp-Asp (WD) repeats profile. 1257 1270 IPR001680 GO:0005515
Cca02g01880 1524 MobiDBLite consensus disorder prediction 338 395 - -
Cca02g01880 1524 SMART WD40_4 1275 1312 IPR001680 GO:0005515
Cca02g01880 1524 SMART WD40_4 1481 1522 IPR001680 GO:0005515
Cca02g01880 1524 SMART WD40_4 1232 1270 IPR001680 GO:0005515
Cca02g01880 1524 ProSiteProfiles Trp-Asp (WD) repeats profile. 1490 1524 IPR001680 GO:0005515
Cca02g01880 1524 SUPERFAMILY RING/U-box 547 620 - -
Cca02g01880 1524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1282 1314 - -
Cca02g01880 1524 MobiDBLite consensus disorder prediction 622 641 - -
Cca02g01880 1524 Pfam WD domain, G-beta repeat 1281 1312 IPR001680 GO:0005515
Cca02g01880 1524 Pfam WD domain, G-beta repeat 1492 1521 IPR001680 GO:0005515
Cca02g01880 1524 Gene3D - 672 1055 IPR011989 -
Cca02g01880 1524 SMART Ubox_2 551 615 IPR003613 GO:0004842|GO:0016567
Cca02g01880 1524 ProSiteProfiles U-box domain profile. 547 622 IPR003613 GO:0004842|GO:0016567
Cca02g01880 1524 MobiDBLite consensus disorder prediction 345 359 - -
Cca02g01880 1524 MobiDBLite consensus disorder prediction 423 449 - -
Cca02g01880 1524 ProSiteProfiles Trp-Asp (WD) repeats profile. 1282 1314 IPR001680 GO:0005515
Cca02g01880 1524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1490 1524 - -
Cca02g01880 1524 SUPERFAMILY ARM repeat 695 1049 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01880 Cca-Chr2 38157908 38166829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01880 537 940 U-box Gene Family AT1G23030 25.908 1.28e-18 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01880 - - gmx:100776142 2660.17