LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g01876	ATGGCTGTAAGATCATGTCTCGATGCATTAGcctatgatgtgtttctcaacttcagaggctcagacacacgccacggttttactggcaatctctacaaagcccttcatgacaggggaatccacactttcattgatgatgaggagcttcagagaggagaggaaataacaccagcacttcaaagcgcaattgaaaagtccaagattgccatcattgtgctctctaacaactatgcttcttcctcattttgcttagatgaacttacctacatcgttgagtgccttaatagaaaagatctgttggttttacctgtcttttataacgttgatccttctgatgtacgataccagaaaagtagttatggagaagcattagctaagcatgaggaaaggttcgagcataacatggagaagttgcagaaatggaagatggctttgcatcaagtagctaacttgtctggctttcatttcaaatatggAGATGGATATGAGTACCAGTTTATTGAGAGGATTGTTGAGTTGGTCTCTAGCAAGATTAATCGTGCTTCTTTACCTATTGCGGATTACCCCGTTGGACTAGATTCACAAGTTTTAGAAGTAAAGAAGCTTTTGGCTGTTgaatttgataatagtgtccacatgatagggatccatggaattggtgggataggaaaatcaacacttgctcGAGCAGTTTACAATTCCATCGCTGACGATTTTGATGGTTCATGTTTTCTTGAAAACGTGAGAGAAAAATCAAACAAACATGGGTTAAAGCATCTCCAAAGCATCCTTGTTTCGGAAATTCTTAGAGATAAGAAAATCAACTCAGCAAGTGTGGAAAAAATAACTTCAATGATGCAGCATAGGCTCCAGCAAAAGAAGGTTCTCTTGATTCTAGATGATGTTGATAATCACCAGCAATTGGAGGCTTTCAAACCTTATTGGTTTGGTCCTGGCAGCAGAGTCATCATCACCACTAGGGACAAACAACTGCTAGCATCTCATGAGGTCAAAACAACATATGAGGTAAAGGAATTGAATAAGAACAATGCTCTTCAATTACTTACATGGAAAGGTTTTAAAACGGAAATAGTAGATCCAAGTTATGAAGAGGTATTGAATTGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAATAATAGGGTCCAACTTGTTTGGAAAAAGTATTAAAGAATGGAGATCTGCTATCAATCAATATAAAAGAATTCCCAATAATCAAATCCTAGAGAAACTTAAAGtaagctttgatgctttggaggaagaagagaagagtgtttttcttgacattgcttgttgcttcaaagaatataaattgacagaggttgaagatatacttcgtgctctttatggtgactgcatgaaatatcatgttggggtgttgattgaaaaatctctcataaaggttagtcaatatggtacaattaaattacatgacttgattcaagacatgggtcgagaaattgaccgaaaagaatcaccgaaagagccagggaagcacaggagattatggttatggaaagatataattcaagttttaaaagacaacacgGGAACTAGTGAAATCGAAATCATATGCCTGGATTCTCCCATATTGGGCAAAGAAGAAATAGTAGAATGGAATGGAAATGCTTTCAAGAAAATGAATAACCTTAAAATACTTGTTATCAGAAATGGAAATTTTTCTGAAGGTCCCAAATATCTTCCAAACAGTTTGAGAGTACTGGAATGGTGGAAATACCCTTCGCATTGTTTACCATCTGATTTTCATCCAAAGGAACTTGCCATATGCAAGTTACCTGATAGTTACTTTACGTCATTTGAGTTTGATCGCTTCTCAAAGAAGTTTGTCAGTCTAAGTGTTTTGAATTTTGATTGGTGCAAACATTTAACACGGATACCTGACCTATATGGTCTCCCAAATTTGAGTGAACTCTCATTTCAACGTTGTCAGAATTTGATTACAGTTCACAATTCAATTGGCTTTCTGCATAAACTTAAAACATTGAGTGCTGTTGGATGCCGCAAGCTTAGGAGTTTTCCACCTATCAAGTTGACCTCTCTTGAAAAACTTGAACTTTCATTTTGTTCTAGTCTCGGGAATTTTCCAGAAATATTGGGAAAGATGGAAAACATGAGGGAACTTAATTTACTACACACTCCAATAAAAGAATTGCCACTTTCATTTCAAAATCTCATTGGACTCCGAGGATTATGCATGACAAACAATGAAATTGTTCGGTTACCAAGTAGCATTGTCATGATGCCAGAACTGACTACAATTTCGGCTTCCGGATTGAAAGGGTGGCAATGGCTAGAACAAGAAGAGGGTGAAGAAAAAGTGGGTTCAATAGTATCTTCAAAGGTAGAATATCTTCGGGCCTCAAAATGCAATTTGGATGATGATTTTTTTTCAATAGGTTTCACGAGGCTTGCTTATGTGAATCAACTAGACCTATCCAACAATAATTTCACAGTCATTCCTGAATGCATCAAACAATGTCAACTTTTACAGAGGCTTGATGTGAGAAATTGCAAGCATCTTCGGGAAATTAGAGGGATTCCACCAAACTTAAAATATTTCCTTGCAACAAACTGTGTATCCTTGACTTCCTCCAGTATAAGCATGTTCCTATATCAGAAACTACATGAGGCTGGAAACACTTTGTTTCATTTGCGAGGAGGAAGGATTACAGAGAGGTTCGATCATCAAAGCAATGGACCTTCTATTTCTTTGTGGTTTCGTAACAAAGTTCTTTGTCATGATATTGCACCTTGTGATAACTACACTACAGTTTTTAGTCCCATTGTTCTCATCAATGGCAACCAATATTCTTTCGCTTTTGAGCTTTGTTTCTCAATAGTCAATGGCAAGGGGAATGAAACATACATATTGTTCTGA	2928	0.2657	MAVRSCLDALAYDVFLNFRGSDTRHGFTGNLYKALHDRGIHTFIDDEELQRGEEITPALQSAIEKSKIAIIVLSNNYASSSFCLDELTYIVECLNRKDLLVLPVFYNVDPSDVRYQKSSYGEALAKHEERFEHNMEKLQKWKMALHQVANLSGFHFKYGDGYEYQFIERIVELVSSKINRASLPIADYPVGLDSQVLEVKKLLAVEFDNSVHMIGIHGIGGIGKSTLARAVYNSIADDFDGSCFLENVREKSNKHGLKHLQSILVSEILRDKKINSASVEKITSMMQHRLQQKKVLLILDDVDNHQQLEAFKPYWFGPGSRVIITTRDKQLLASHEVKTTYEVKELNKNNALQLLTWKGFKTEIVDPSYEEVLNCVVTYASGLPLALEIIGSNLFGKSIKEWRSAINQYKRIPNNQILEKLKVSFDALEEEEKSVFLDIACCFKEYKLTEVEDILRALYGDCMKYHVGVLIEKSLIKVSQYGTIKLHDLIQDMGREIDRKESPKEPGKHRRLWLWKDIIQVLKDNTGTSEIEIICLDSPILGKEEIVEWNGNAFKKMNNLKILVIRNGNFSEGPKYLPNSLRVLEWWKYPSHCLPSDFHPKELAICKLPDSYFTSFEFDRFSKKFVSLSVLNFDWCKHLTRIPDLYGLPNLSELSFQRCQNLITVHNSIGFLHKLKTLSAVGCRKLRSFPPIKLTSLEKLELSFCSSLGNFPEILGKMENMRELNLLHTPIKELPLSFQNLIGLRGLCMTNNEIVRLPSSIVMMPELTTISASGLKGWQWLEQEEGEEKVGSIVSSKVEYLRASKCNLDDDFFSIGFTRLAYVNQLDLSNNNFTVIPECIKQCQLLQRLDVRNCKHLREIRGIPPNLKYFLATNCVSLTSSSISMFLYQKLHEAGNTLFHLRGGRITERFDHQSNGPSISLWFRNKVLCHDIAPCDNYTTVFSPIVLINGNQYSFAFELCFSIVNGKGNETYILF	975

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca02g01876	975	Gene3D	-	345	429	IPR042197	-
	Cca02g01876	975	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	15	913	-	-
	Cca02g01876	975	Gene3D	Ribonuclease Inhibitor	710	894	IPR032675	-
	Cca02g01876	975	ProSiteProfiles	TIR domain profile.	10	178	IPR000157	GO:0007165
	Cca02g01876	975	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	913	IPR044974	GO:0006952
	Cca02g01876	975	Pfam	TIR domain	11	178	IPR000157	GO:0007165
	Cca02g01876	975	SUPERFAMILY	"Winged helix" DNA-binding domain	416	523	IPR036390	-
	Cca02g01876	975	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	154	IPR035897	-
	Cca02g01876	975	Gene3D	-	9	175	IPR035897	-
	Cca02g01876	975	Gene3D	-	176	341	IPR027417	-
	Cca02g01876	975	SMART	till_3	11	151	IPR000157	GO:0007165
	Cca02g01876	975	Pfam	NB-ARC domain	196	411	IPR002182	GO:0043531
	Cca02g01876	975	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	178	439	IPR027417	-
	Cca02g01876	975	SUPERFAMILY	L domain-like	540	897	-	-
	Cca02g01876	975	Gene3D	Ribonuclease Inhibitor	526	709	IPR032675	-
	Cca02g01876	975	PRINTS	Disease resistance protein signature	213	228	-	-
	Cca02g01876	975	PRINTS	Disease resistance protein signature	289	303	-	-
	Cca02g01876	975	PRINTS	Disease resistance protein signature	380	394	-	-
	Cca02g01876	975	PRINTS	Disease resistance protein signature	692	708	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g01876	Cca-Chr2	38104322	38110166	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g01876	627	816	WRKY Transcription Factor Family	AT4G12020	31.220	6.64e-10	61.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g01876	-		-	gmx:100812810	1346.26