Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01870 ATGGCTGTGCACAAAAATCTAAAGCTCCATAAACTATATTTTGTGATCCTAATAGCAGCAGCAAAAGCATCATCTCAACCCACTTCAAATTGCCCCCAAAGCTGTGGAAATCTCAACATTCCCTACCCTTTTGGGACACGTGAGGGTTGTTACTTGAACCACACTTTCCTCATCACATGCAACCATAGCAACTCCACCACACCCACCCCTTTATTGGGAAGTGACAACATAGTGGTGCTCAACATATCACTAAATGAAGGAGAAATTCTAGTTTCAAGCCCCGTAATCCATGATTGCTATGGCAATTATTCTAAGGAGGAAAATGGTTTCAATTTGACCCATTTTTCAATCTCACCTAGTAAGAACAAATTCACCACACTTGGGTGTGAAACGGTGGGAATATTCATGGGTTATGATAGCAACAAGAAACATGTTACAACCACGGGATGTGTATCCACATGTGGCACACTAGATGACATCACAAGTAATATTGGATCATGTGGTGGCATTGGTTGTTGCCAAATTAGTGTTCCCAATGGATTATATGGTTTTGCAATGCAAAGTTGGAGTATGGATAACCACTCCACGGTACGTGAATTCAATCCATGCAACTATGCGTTCATAGTTGAGGAAGGGTATTACAAATTTGAGACAACAAATCTTAAGAATCTCGAGAATAAGAGGTTGCCCATGGTGCTTGATTGGGCTGTGGAAAATCACACGTGCCAAGAGGCACAAGATCTTAGTAGCTATGCATGCAAGGGCAAGAACAGTGTTTGCCTCGATTCATCAATTGGTTATCGTTGCAAATGTCGTCATGGTTTCGAGGGAAACCCTTACATTCGTGATGGCTGCCAAGATATCGATGAATGTGCTACGAACACTAATCCATGCATCATCAGAAAAAGATGCCAAAACCTTGATGGCAGTTTCAAGTGCTCATGTCCAAAGGGACACGAAGGAGATGGATTGACAAATGGCGAAGGCTGCCGACCCAAAAATGACAAACCCATAGGGAATCTAATACTTATAATTGGACTGAGTTTGAGCTTAAGTCTATTGGCAGTGGTTGTGGGATGCCTAAACATATACCCCCAAATCCGTGAAAGAAAGCTCATCAAAATGAGAGAAAACTATTTTCAAAAAAATGGTGGTATGTTACTGCAAGAACAGATTGATTCACACCATGGCTCAACTGAAAGAGCCACAATCTTCACTGTTGAGGAGCTCAAGAAAGCCACCAACAACTATGATGAGGATAGAATCATAGGCAAAGGAGGCCATGGAACAGTGTACAAAGGTACATTATCAAATGGCAGGGTTGTTGCCATCAAGAAGTCCATGGTTTCTAACCAAAGTGAGATTGAGCAATTCATCAACGAAGTGGTTGTGCTTACCCAAATCAACCACAGGAATGTTGTCAGACTACTAGGTTGTTGTTTAGAGACAGAATTTCCCTTACTTGTTTATGAGTTCATCACTAATGGTACCCTTTGTGAGCATCTACATTTTGAGGGTCAAGCATGTAACAGTAATAATCACAAACTTTCATGGACAACACGTTTGAGAATTGCAGCAGAGACAGCAGAAGCTCTTGCATACTTGCATTCAGCTGCTTCTACACCAATCATACATAGAGATGTTAAAACTGCAAATATTCTTCTTGATGAGAATCTCACAGCCAAGGTTTCTGACTTTGGGGCTTCAAAGTTTGTTCCTCTTGATAAAACTCAGTTAACCACTTTGGTGCAAGGAACATTGGGTTACCTTGACCCGGAGTACTTCCAAACAAGTCAACTAACTGATAAGAGTGATGTGTATAGCTTTGGTGTTGTCCTTGCAGAACTATTGACAAGTAAGAAGGCACTTTCATTTATTAGGCCTGAGATCTATAGAAACTTGTCTATGTATTTTGTTTCTACAATGAATGAGGGTCGCTTGGATCAAATATTGGACAATGAAATTGTGAGTGATGCAAGTGTTGGGTATATAATAGAAGTGGCTAATCTTGCCAAGAGGTGTCTTAGGCTAAAGGGAGAAGAAAGACCAAGCATGAAAGAAGTGGCAATGGAGTTGGAGGGAATAAGGGTCATGGAAAAGCATTCTTTAGGAGGAACAAATGATGTTATATCTGAAGAAGAGAGAGAGTACTTTCTCAAACCACGTTCGCCCATTAACATTGTTGATCATGGTGACGGTACTAGTGGTAGCAGCACAATTTCTAGGTTCTATAATTTACATAACCAGATTTTGGAACCACTAGAGGATGGACGATAG 2277 0.4084 MAVHKNLKLHKLYFVILIAAAKASSQPTSNCPQSCGNLNIPYPFGTREGCYLNHTFLITCNHSNSTTPTPLLGSDNIVVLNISLNEGEILVSSPVIHDCYGNYSKEENGFNLTHFSISPSKNKFTTLGCETVGIFMGYDSNKKHVTTTGCVSTCGTLDDITSNIGSCGGIGCCQISVPNGLYGFAMQSWSMDNHSTVREFNPCNYAFIVEEGYYKFETTNLKNLENKRLPMVLDWAVENHTCQEAQDLSSYACKGKNSVCLDSSIGYRCKCRHGFEGNPYIRDGCQDIDECATNTNPCIIRKRCQNLDGSFKCSCPKGHEGDGLTNGEGCRPKNDKPIGNLILIIGLSLSLSLLAVVVGCLNIYPQIRERKLIKMRENYFQKNGGMLLQEQIDSHHGSTERATIFTVEELKKATNNYDEDRIIGKGGHGTVYKGTLSNGRVVAIKKSMVSNQSEIEQFINEVVVLTQINHRNVVRLLGCCLETEFPLLVYEFITNGTLCEHLHFEGQACNSNNHKLSWTTRLRIAAETAEALAYLHSAASTPIIHRDVKTANILLDENLTAKVSDFGASKFVPLDKTQLTTLVQGTLGYLDPEYFQTSQLTDKSDVYSFGVVLAELLTSKKALSFIRPEIYRNLSMYFVSTMNEGRLDQILDNEIVSDASVGYIIEVANLAKRCLRLKGEERPSMKEVAMELEGIRVMEKHSLGGTNDVISEEEREYFLKPRSPINIVDHGDGTSGSSTISRFYNLHNQILEPLEDGR 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01870 758 Pfam Wall-associated kinase 166 272 IPR013695 GO:0004674|GO:0016021
Cca02g01870 758 Gene3D Transferase(Phosphotransferase) domain 1 493 713 - -
Cca02g01870 758 SUPERFAMILY EGF/Laminin 286 322 - -
Cca02g01870 758 Pfam Protein kinase domain 417 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01870 758 Gene3D Phosphorylase Kinase; domain 1 382 492 - -
Cca02g01870 758 SMART egfca_6 287 331 IPR001881 GO:0005509
Cca02g01870 758 SMART egfca_6 242 286 IPR001881 GO:0005509
Cca02g01870 758 SMART serkin_6 417 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01870 758 ProSitePatterns Calcium-binding EGF-like domain signature. 287 313 IPR018097 GO:0005509
Cca02g01870 758 SMART egf_5 241 286 IPR000742 -
Cca02g01870 758 SMART egf_5 290 331 IPR000742 -
Cca02g01870 758 SUPERFAMILY Protein kinase-like (PK-like) 400 693 IPR011009 -
Cca02g01870 758 CDD STKc_IRAK 423 695 - -
Cca02g01870 758 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524
Cca02g01870 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Cca02g01870 758 Pfam Calcium-binding EGF domain 287 323 IPR001881 GO:0005509
Cca02g01870 758 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 705 IPR045274 GO:0007166
Cca02g01870 758 ProSiteProfiles Protein kinase domain profile. 417 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01870 758 ProSiteProfiles EGF-like domain profile. 287 325 IPR000742 -
Cca02g01870 758 Pfam Wall-associated receptor kinase galacturonan-binding 31 91 IPR025287 GO:0030247
Cca02g01870 758 Gene3D Laminin 238 330 - -
Cca02g01870 758 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 15 705 - -
Cca02g01870 758 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 304 315 IPR000152 -
Cca02g01870 758 CDD EGF_CA 287 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01870 Cca-Chr2 38052196 38059265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01870 7 697 Receptor kinase-like Gene Family AT1G21230 46.110 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Cca02g01870 Pkinase 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01870 - - vun:114190859 1154.04