Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01869 ATGTCAGGAGAGGAAGTTTGGTCATCAAATGAAGAAGAGTATAACAAACCTCAGCCTCCATTTGGTAACAAGAGTGGCTACGATTCAAGAACAGGCATTTATCACTCTCTAGTTAAGCTTGACACCAAGCATGAACTCCCAACAAAGCTTGACCTCAACACTGCCAATTTTGTGCTGTCACAGTTTCCACAAGCAGGCCTTGCTGAGGCAAGAATTGCATTCATTGATTCGAGTACTAATAGGAGTGTAAGCTATGCTGAGCTAAGACAATCTATTTACTCTCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAGGAAAGGAGATGTGGTGCTTGTGTTATCGCCAAACTCAATCTTGTAG 363 0.4242 MSGEEVWSSNEEEYNKPQPPFGNKSGYDSRTGIYHSLVKLDTKHELPTKLDLNTANFVLSQFPQAGLAEARIAFIDSSTNRSVSYAELRQSIYSLASALFHGLEVRKGDVVLVLSPNSIL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01869 120 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Cca02g01869 120 SUPERFAMILY Acetyl-CoA synthetase-like 65 119 - -
Cca02g01869 120 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 18 120 - -
Cca02g01869 120 Gene3D - 39 120 IPR042099 -
Cca02g01869 120 MobiDBLite consensus disorder prediction 1 16 - -
Cca02g01869 120 MobiDBLite consensus disorder prediction 1 27 - -
Cca02g01869 120 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 18 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01869 Cca-Chr2 38046930 38047292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01869 28 120 Monolignol Biosynthesis Gene Families AT1G20500 35.417 1.41e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01869 K10526 - ccaj:109804990 239.58