Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01864 ATGGCAACAAGATCAAAGTTTTTGGACAGTGCAATAATAAGAGGTTCTCACTCTCTCACTGCCTCTAACCATCTTCATGCCTTAAGAAGTGGGGTAAACTCATCAATAGCATCATCACCTGAGAAGCCTTTTCCATGTTCAAGTTATACTTCAATGAAAGAAGACACATGGATTAGTCATATCCCTTCAAAATTCAATGGCCATGAAGACATCAAGAATGGCAAAGAGAACAACCAATCCAATTCTATCTTCCCAGTCCCAGACATGAAAAACAGCTCCATTCCTCTAAATCTCTTGGAAACTCTCCCTCCATTAACTATAGGACCATGTTTTGATGAGCCAGTGGTTTCTCTAGTATCATCATCTTCTGCCACACCAACAAATTTTCCAAACTTGACTTTGTTTTTGCAGGAACCCTCCATGATGTACTCATCATCGTCAAGTATCAAAGGTGGTGAAGTCATGTCAGCAACTTCAGATTCCACATATCATGTGTCTCAGTTTGGCCAAAACCAGCATCAAGCATGTAGTGATGCACACAAAATGAACAAGAATTGGTTGAGTAGCACTAGGACTCAGCCTATGAAGTATGGTGGAAGAGGGAAGGTGTTTAAAGGGGTGAGGCAGAGACACTGGGGGAAATGGGTGGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTTGACACTGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTAAGAGGAGAATATGCTCAGTTGAACTTCCCAGATCTCAAGCATGTGATTCAAGCCAATTCTCTGAATGGAACCACTGCTGCACTTGTGGAGGCAAAACTACAAGCAATTTCACAAGGTGTTTCTTCTCATAAGAAGTCCAATGTCTCACTAGCAGGGTCAAGAATTAAGCACACTGATGAGAATGGAATATTGACAAGTATAAGTGGAAAGGATTCAAATTCAACCATAAGGGTTGGAGCTGAGATAAGTGAGAGAAGCAAAAGTACACTCCATGAGATGTCAGATTTGGAAACTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACGATATTTGGAATGAACTTTCAGTCTCTAATTTATGA 1116 0.4122 MATRSKFLDSAIIRGSHSLTASNHLHALRSGVNSSIASSPEKPFPCSSYTSMKEDTWISHIPSKFNGHEDIKNGKENNQSNSIFPVPDMKNSSIPLNLLETLPPLTIGPCFDEPVVSLVSSSSATPTNFPNLTLFLQEPSMMYSSSSSIKGGEVMSATSDSTYHVSQFGQNQHQACSDAHKMNKNWLSSTRTQPMKYGGRGKVFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVSSHKKSNVSLAGSRIKHTDENGILTSISGKDSNSTIRVGAEISERSKSTLHEMSDLETVQLSRMPSLDMDDIWNELSVSNL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01864 371 ProSiteProfiles AP2/ERF domain profile. 203 260 IPR001471 GO:0003700|GO:0006355
Cca02g01864 371 PRINTS Ethylene responsive element binding protein signature 204 215 IPR001471 GO:0003700|GO:0006355
Cca02g01864 371 PRINTS Ethylene responsive element binding protein signature 226 242 IPR001471 GO:0003700|GO:0006355
Cca02g01864 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 370 - -
Cca02g01864 371 SUPERFAMILY DNA-binding domain 203 261 IPR016177 GO:0003677
Cca02g01864 371 Pfam AP2 domain 203 252 IPR001471 GO:0003700|GO:0006355
Cca02g01864 371 Gene3D AP2/ERF domain 203 261 IPR036955 GO:0003700|GO:0006355
Cca02g01864 371 CDD AP2 204 262 IPR001471 GO:0003700|GO:0006355
Cca02g01864 371 SMART rav1_2 203 266 IPR001471 GO:0003700|GO:0006355
Cca02g01864 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 3 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01864 Cca-Chr2 38000670 38002167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01864 80 368 AP2-EREBP Transcription Factor Family AT4G13620 40.000 1.92e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g01864 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01864 - - gmx:100820013 542.347