Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01849 ATGGGTCGCGAAAGTGTGTTCCTTCCAACCACTGCCTCCACCACAGTGAACCCAGTGGCAGCACCACCTACCTCCCTTGCTCCTGGCTTCAGGTTCCACCCAACTGATGAGGAACTTGTTATTTACTACCTCAAACGCAAGGTTTCAGGAAAACCTTTTAGATTCGATGCTATATCTGAGGTTGACATATACAGGAGCGAGCCCGGGGACCTGGCAGATAAGTCAAGGCTGAAGACCAGGGACCAGGAGTGGTATTTTTTCAGTGCATTGGACAAGAAATATGGGAATGGGGGGAGGATGAACAGGGCTACGGGCAAAGGGTATTGGAAAGCCACTGGGAATGATCGACAAGTGAAGCATGAAGAAAGGGTTGTGGGGTTGAAGAAAACTTTGGTGTTTCATAGTGGACGGGCTCCGGATGGCAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTACTGAAAAGGAGATGGAGAGGATTGGGACTGGATCCTCTCAGCCCCAGGATGCGTATGTTTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCGAATGGGCAACGATATGCTCCCTTCATTGAAGAAGAATGGGATGATGCAGCGGGAATGGTTCCAGGGGTAGAGCCTGTGGATAATGGCTATGTTGCCCACCAACCGCGTGTTGAAGGAAATGGTGTTTTATGCACTGAAGTTGTACAGAATTGTGGAAACTTGTTCCATTTAAGAGTCTATGTGTATGATCATGGGATTCTTTAA 762 0.4764 MGRESVFLPTTASTTVNPVAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAISEVDIYRSEPGDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATGKGYWKATGNDRQVKHEERVVGLKKTLVFHSGRAPDGKRTNWVMHEYRLTEKEMERIGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDAAGMVPGVEPVDNGYVAHQPRVEGNGVLCTEVVQNCGNLFHLRVYVYDHGIL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01849 253 Gene3D NAC domain 35 183 IPR036093 GO:0003677|GO:0006355
Cca02g01849 253 ProSiteProfiles NAC domain profile. 26 180 IPR003441 GO:0003677|GO:0006355
Cca02g01849 253 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 18 235 - -
Cca02g01849 253 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 235 - -
Cca02g01849 253 Pfam No apical meristem (NAM) protein 28 153 IPR003441 GO:0003677|GO:0006355
Cca02g01849 253 SUPERFAMILY NAC domain 18 181 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01849 Cca-Chr2 37872712 37875193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01849 1 210 NAC Transcription Factor Family AT3G10480 61.633 3.51e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca02g01849 NAM 6.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01849 - - ccaj:109805104 493.041