Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01846 ATGGACAAAAATGCTCAAAGGTTACCAAACACAATCACAATATTGGTCTACCTTCCTTGGGATGCAATGCATCAAGCCTTACATAGGTTTAATAGACTCGAGGAGTTGGGGATTTGTCTTGATAACCCCATTCCACCAATCATCGCTTTCCTTCTCGCGCCAAATACAAAAACCCACCACCACCATTCCCCTTTCTCCTTCTGCCTCTCACACCACCGGGTTTGTGAGATGTCGGATGCGCCAACGAGCCCGAGCCACGAGAGTGGCGGGGGGGAGAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCCCGGAGCCACGAGAGTGGCGGCGAGCAGAGTCCGCGTGGCTCCTCGTCCGGCGCGAGGGAGCAGGATCGGTACCTTCCCATTGCCAACATCAGCCGCATCATGAAGAAGGCGTTGCCTCCCAATGGAAAGATTGCTAAGGACGCTAAAGACACCATGCAAGAGTGCGTTTCCGAGTTCATCAGCTTCATCACCAGCGAGGCGAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACTATTAATGGAGACGATTTGTTATGGGCGATGGCCACTTTAGGATTTGAAGACTACATAGAGCCGCTTAAGGTGTACCTAGCAAGGTACAAAGAGGGTGACACCAAAGGATCTGCTAGAAGTGGCGATGGATCTATTAGACCCGATCAAGTTGCCCTTGCAGGTCAAAATGCTCAGCTTGTTCATCAGGGTTCACTGAACTATATTGGTTTGCAGGTGCAACCACAACATCTGGTTATGCCTTCAATGCAAAGCCATGAGTAG 900 0.44 MDKNAQRLPNTITILVYLPWDAMHQALHRFNRLEELGICLDNPIPPIIAFLLAPNTKTHHHHSPFSFCLSHHRVCEMSDAPTSPSHESGGGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYKEGDTKGSARSGDGSIRPDQVALAGQNAQLVHQGSLNYIGLQVQPQHLVMPSMQSHE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01846 299 PRINTS CCAAT-binding transcription factor subunit A signature 187 205 - -
Cca02g01846 299 PRINTS CCAAT-binding transcription factor subunit A signature 206 224 - -
Cca02g01846 299 PRINTS CCAAT-binding transcription factor subunit A signature 225 243 - -
Cca02g01846 299 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 135 279 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca02g01846 299 Coils Coil 135 136 - -
Cca02g01846 299 Gene3D Histone, subunit A 146 277 IPR009072 GO:0046982
Cca02g01846 299 MobiDBLite consensus disorder prediction 78 159 - -
Cca02g01846 299 SUPERFAMILY Histone-fold 156 252 IPR009072 GO:0046982
Cca02g01846 299 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 135 279 - -
Cca02g01846 299 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 159 223 IPR003958 -
Cca02g01846 299 ProSitePatterns NF-YB/HAP3 subunit signature. 190 206 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01846 Cca-Chr2 37850475 37857179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01846 137 293 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.625 2.39e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca02g01846 CBFD_NFYB_HMF 2.5e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01846 K08065 - gmx:100779577 313.923