Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01841 ATGGAGCAAGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAAGAGGTTGACATGGACGCCGACGCCGAGCAACAAGAAGATGAGCAACTTCCCCCCAATCACACAAGCAagGAATTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAAGAAGCTAGCGCGCTCCGCGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCTTCTGGCACTTCTGCAACTCAAGCTGAAAAGGAGGAAGTGGATTCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACTCCTGAAGAAGTGCAACAACATTTTCAGTCCTGTGGAACTGTGAACAGGGTGACAATACTGACAGACAAATTTGGTCAACCTAAAGGGTTTGCTTATGTAGAGTTTGTTGAGGTTGATGCTGTTCAGAATGCCCTCCTGTTGAACGAATCAGAATTGCATGGTCGACAATTGAAGGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAGTATTTTGGAAGAAGACCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCCCCATTCTTTCCACCATATGGTTATGGAAGGGTTCCAAGGTATAGAAGACCTACTCGATACAGGCCATACTAG 648 0.4707 MEQEEHEVYGADIPDEEVDMDADAEQQEDEQLPPNHTSKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPTGFRSRRPFMPAPFFPPYGYGRVPRYRRPTRYRPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01841 215 Gene3D - 11 173 IPR012677 -
Cca02g01841 215 SUPERFAMILY RNA-binding domain, RBD 81 188 IPR035979 GO:0003676
Cca02g01841 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Cca02g01841 215 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 214 - -
Cca02g01841 215 CDD RRM_II_PABPs 92 163 - -
Cca02g01841 215 MobiDBLite consensus disorder prediction 66 89 - -
Cca02g01841 215 MobiDBLite consensus disorder prediction 1 28 - -
Cca02g01841 215 MobiDBLite consensus disorder prediction 29 46 - -
Cca02g01841 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 167 IPR000504 GO:0003723
Cca02g01841 215 MobiDBLite consensus disorder prediction 1 46 - -
Cca02g01841 215 SMART rrm1_1 92 163 IPR000504 GO:0003723
Cca02g01841 215 Coils Coil 38 68 - -
Cca02g01841 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01841 Cca-Chr2 37787669 37795802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01841 92 163 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 7.24e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01841 K14396 - gmx:100527545 347.051