Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01837 ATGTATTGGGGAGTGATGGCAGGGAACATGGGGTGGGGTGTCATAGAAGAAGAGAGTTGGAGGAAGGGTCCTTGGACTGCTGAGGAGGACAGATTGCTCATTCAATATGTCAGGTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTACCCTTGCAGGGCTGAAGAGAAATGGGAAGAGCTGCAGGTTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAAGGGTCAGATAACACCACAAGAAGAGAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGATAATGAGATTAAGAATTATTGGAGGACTCATTTCAAGAAAAAGGCTAAAAGCCCCTCTGATGCTGGTGAGAAGGCCAAAATTCGTTCCTCAAGGAagcagcaatttcaacagcaacaactgcagttgaagcagcagcaggttcagcaacagcaacaagtgcaattcaactttgacatgaaagggatCATAAATTTGCTTGAGGAAAATGACCATAGAGTGCCATCTATATCTCAAGAGACACAAGAAATGGTTAACATGTATCCAAACACTACTTCAGAACAGCAGGGCTACTTGAACTCTATGTTCAATGTTGTCAATTACAATAATGTCTCTGCACCAGAGTCCTCAGATGAAGAAATATTTTGGGATGATGGGCTGTGGAATTTGGACGATGTTCTTTTCAATTTCAATGCTGCTAGTGCCACCAGCAAAGCCAGTTTATACAATTTAGCTGCTCCTTTCTGTTAA 795 0.3874 MYWGVMAGNMGWGVIEEESWRKGPWTAEEDRLLIQYVRLHGEGRWNSVATLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAGEKAKIRSSRKQQFQQQQLQLKQQQVQQQQQVQFNFDMKGIINLLEENDHRVPSISQETQEMVNMYPNTTSEQQGYLNSMFNVVNYNNVSAPESSDEEIFWDDGLWNLDDVLFNFNAASATSKASLYNLAAPFC 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01837 264 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Cca02g01837 264 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 257 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca02g01837 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Cca02g01837 264 Gene3D - 79 163 - -
Cca02g01837 264 CDD SANT 24 69 IPR001005 -
Cca02g01837 264 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Cca02g01837 264 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Cca02g01837 264 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Cca02g01837 264 MobiDBLite consensus disorder prediction 121 143 - -
Cca02g01837 264 Gene3D - 22 74 - -
Cca02g01837 264 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Cca02g01837 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Cca02g01837 264 MobiDBLite consensus disorder prediction 121 139 - -
Cca02g01837 264 CDD SANT 79 120 IPR001005 -
Cca02g01837 264 PANTHER MYB TRANSCRIPTION FACTOR 1 257 - -
Cca02g01837 264 SMART sant 21 71 IPR001005 -
Cca02g01837 264 SMART sant 74 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01837 Cca-Chr2 37756678 37758110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01837 17 264 MYB Transcription Factor Family AT4G13480 52.809 4.68e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01837 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01837 K09422 - gmx:100813935 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01837 02 37756678 37758110 Cca02g01837 02 37756678 37758110 ECH