Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01823 ATGTTGCACGATGTTTTTGATCCACCAAAGCCCGAATCGCAGCACCAACTTCCCATTGACGACATTTCAAGCCCTCTTAGTGCTCGAATTTTCGAACTTTGTAACAGTGATTTTTTCCCAGAGGCTTTGCAGAATTCTGAGGTTACTTCCAGCTCAAACTGTTGCTATGAGGAGAACTCCTCATATGCCACAACAAACATATCTTTAACTGTAGATGTAGAAAATAAGTTGaatagcaatagcaatacagtgaccaccccaactagcactaccaccaacaacaacacaaccaacagcaGTAATCTTTCTATTATCTTTGATTCCCAAGAAGAAATTGACAATGACATCTCTGCCTCCATAGACTTCTCACTATCTCCATCTTTCAATGTTCCACCATTTCTCCCAGTCACATCCCAGCAAGAACAGTTTGATTTCTCTTCTGTGCAGCCACAGGTCCAACTAGCATCATGTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCACTGACTCTGTTGCACCTCCTTTTATGGGGGCTCCATTGCCATCTGTTTTCGAAGAAGACTGCATATCTTCTGTCCCTTCTTATGTGCCTCTTAACCCTTCATCTCCTTGCACTTATCTCAGTCCTGGCATGCCACCATACATGCCTTCTGGACCCCTTACTACTGCCTTATCAACTGATAGTTCCGGGTTATTTGGTGGGGGCATTCTTCTTGGTTCTGAACTTCAATCACAGGAATTGGAATACCAAGGAGAAAATGGAAGAATGTATTGTGCAGATTCAATTCAGCGGGTGTTCAACCCTCCAGACCTTCAGGCACTTGGTAATGAGAGTCAGCAACTAGTACCCGGGGCTGGTAGTTCTGCCACTTTGACACCAGAAATCTCAAACTTAGAGGACTCCTCCTTCAAGGTTGGAAAACTTTCTGTTGagcaaaggaaagaaaagatcaatagatacatgaagaaaagaaatgaaagaaaCTTCAGCAAGAAAATCAAGTATGCCTGCCGCAAAACTCTTGCAGATAGCCGACCTCGGGTTAGAGGCAGGTTTGCAAAGAATGATGACTTTGGAGAAACCAATAGAACTACTAGTAGCAATCATGAAGAAGATGATGAGGAAGAAGTAGTTGTGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCATGGATTTGA 1236 0.3924 MLHDVFDPPKPESQHQLPIDDISSPLSARIFELCNSDFFPEALQNSEVTSSSNCCYEENSSYATTNISLTVDVENKLNSNSNTVTTPTSTTTNNNTTNSSNLSIIFDSQEEIDNDISASIDFSLSPSFNVPPFLPVTSQQEQFDFSSVQPQVQLASCSVVEGFSQYPTDSVAPPFMGAPLPSVFEEDCISSVPSYVPLNPSSPCTYLSPGMPPYMPSGPLTTALSTDSSGLFGGGILLGSELQSQELEYQGENGRMYCADSIQRVFNPPDLQALGNESQQLVPGAGSSATLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEEDDEEEVVVKDEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01823 411 MobiDBLite consensus disorder prediction 348 378 - -
Cca02g01823 411 PANTHER CCT MOTIF FAMILY PROTEIN 19 411 - -
Cca02g01823 411 MobiDBLite consensus disorder prediction 78 100 - -
Cca02g01823 411 MobiDBLite consensus disorder prediction 348 370 - -
Cca02g01823 411 Pfam CCT motif 313 355 IPR010402 GO:0005515
Cca02g01823 411 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Cca02g01823 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 19 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01823 Cca-Chr2 37661686 37665695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01823 283 362 C2C2-CO-like Transcription Factor Family AT5G24930 37.647 1.89e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca02g01823 CCT 3.5e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01823 - - gmx:100803778 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01823 02 37661686 37665695 Cca02g01823 02 37661686 37665695 ECH