Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01816 ATGGATTCGGATCAAGGGAAGCTCTTCATCGGTGGGATTTCGTGGGACACGACGGAGGACAAGCTGAAGGACCACTTCGGCAACTACGGCGACGTTTTGAGCACTTCCGTCATGAGGGAGAAGAACACCGGCAAGCCCAGAGGCTTCGGCTTCGTCGTCTTCGCGGATCCCTCCATTCTAGATAGGGTTTTGGAAGACAAACATGTTATAGATGGCAGAACGGTTGATGCCAAAAAGGCCTTCTCAAGAGAGGATCAGCAAATTTCTGTCACTTCAAGAACTGGAAATCCCAATTCTGGCATGAATTCTGGAAGTGGTGGTAATGTTAGGACTAAAAAGATATTTGTTGGTGGGTTGCCTCCTACCCTGACTGAAGAAAAATTTCGTCAGTACTTTGAATCTTATGGACATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGGCCAAGAGGATTTGGGTTTATTTCATTTGATACTGAAGAGGCAGTTGATAGGGTTTTGCACAAATCATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTATGATGggaggtggtggagggggtggtggtggaattggtggATATCAAGGGTATGGGGCATCTGGTGGCAACCAAAATGCATATGATAGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGCGCTGCAGGTGGATTCCCTCCTTATGGTTCTTCTGCCTATAGCGctcctggttatgggtatggtcctgctaataatggcattggatatggtgcatatggaaattatggtggtgccactgctgggtatggtggacctgctggtgcaacatatgggaatcctaatgtccctaatgctgCCTATGCTGGTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCCACTCAGGCTCCTTCTGGTTATGGATCTATGGGCTATGGGAACACTGCTCCTTGGGGTGCTCCAAGTGGTGGTGCTGGATCTGGTGGAGGCGGTCCTGGTTCAGCAACTGCAGGTCAGTCCCCTGGTGGAGCTGCtggatatgggaatcaaggttatggatatggtgggtatggtggatatggTGGAAGTGATAGTTCTTATGGCAATTCTAGTGCTTATGGTACTGTAGGTGGACGTACTGGAAGTGCACCAAACAGTAATGCTAGTGGTCCTGGTGGGAATGAACTAACAAGTAGTGGTGGCAGTGGCAGCTATATGGGTGCTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGTAATGCAGCTTGGAGATCTGAACAAACTCATGCATCTGGAAATTATGGGACTCCTCAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1431 0.4095 MDSDQGKLFIGGISWDTTEDKLKDHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRTGNPNSGMNSGSGGNVRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGGGGGGGGIGGYQGYGASGGNQNAYDSRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGNYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPTQAPSGYGSMGYGNTAPWGAPSGGAGSGGGGPGSATAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYGNSSAYGTVGGRTGSAPNSNASGPGGNELTSSGGSGSYMGAGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01816 476 SMART rrm1_1 7 78 IPR000504 GO:0003723
Cca02g01816 476 SMART rrm1_1 113 185 IPR000504 GO:0003723
Cca02g01816 476 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Cca02g01816 476 MobiDBLite consensus disorder prediction 382 418 - -
Cca02g01816 476 Gene3D - 4 88 IPR012677 -
Cca02g01816 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Cca02g01816 476 MobiDBLite consensus disorder prediction 337 359 - -
Cca02g01816 476 Gene3D - 105 229 IPR012677 -
Cca02g01816 476 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Cca02g01816 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Cca02g01816 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 474 - -
Cca02g01816 476 MobiDBLite consensus disorder prediction 84 109 - -
Cca02g01816 476 MobiDBLite consensus disorder prediction 382 476 - -
Cca02g01816 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Cca02g01816 476 MobiDBLite consensus disorder prediction 433 455 - -
Cca02g01816 476 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Cca02g01816 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Cca02g01816 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01816 Cca-Chr2 37611050 37614808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01816 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 25.500 2.99e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01816 K14411 - gmx:100786882 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01816 02 37611050 37614808 Cca02g01816 02 37611050 37614808 ECH