Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01806 aTGGGGATTGCAGTGGCGAGTGTTGATTTGCTGAGTGAAAAGGCAGCGTTGATGAGAGAGTCTCTGCAGAAGAGCCAAACCATCGCAGACAACGTCGTCACCATTCTGGGTTCCTTCGACCACCGTCTCTCCGCCCTAGAAACCGCCATGCGTCCCACTCAGATTAGAACTCACTCCATAAGGAAGGCTCATGAGAATATTGATAGGACTCTGAAGGCTGCGGAGGTTATATTGGCTCACTTTGATCAATATCGTCAGGCAGAGGCAAAAATACTTAAAGGGCCACATGAAGACCTGGAAAACTATCTTGAAGCAATTGATAAGTTGAGAAGCAATATTCAGTTTTTTGGCAGCAAGAAGGGTTTTAAGAGCAGTGACGGTATTGTCATCCACGCTAATAATTTGCTAGCTAAGGCTATTTCGAAGCTAGAAGATGAGTTTAAGCAGTTATTATCATCTTACAGAGATGCCCGTTCAAATGTATTGGAAGAGAGCCTCCAAAAGCTTGGAGTTGAGAAACTCAACAAAGATGATGTTCAAAAGCTGCAATGGGAGATTTTGGAAGCCAAAATTGGAAACTGGATTCATTTCATGCGTATAGCAGTGAAATTGTTGTTTGCTGGTGAGAGAAAAGTTTGTGATCAGATATTTGAAGGCTTTGATTCACTTAGTGAACAGTGTTTTGCCGAGGTGACTACAAACAGTGTCTCAATGCTACTCAGTTTTGGAGAAGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAGTTATTTGTACTATTGGACATGTATGAAATAATGCAAGAGCTTCACTCAGAGGTATGGCTTTTGAAATGCGAAATCACAAATCTTGATGCTATCTCTTTTGTAGGTTTACACTTTACACTAGTCACCACACTAGATGTGATATATTTGACTATCCTTCGTCAAGATGAAGCAGTGAAGCAGAGCCTTCGTGAAGCCGAAGCTGAAGTAGTGAAGTGCGGCGTGGCGTGGTCCCGTTTCCTTGCTAGAATAGGGTTTTCAAATTTGCCTGGTTTTGTTTTACACTTTATGCTCTCTGTTCGGACTGTTCCTATTTGGATTGGTTGTTGCAATaaataa 1101 0.4187 MGIAVASVDLLSEKAALMRESLQKSQTIADNVVTILGSFDHRLSALETAMRPTQIRTHSIRKAHENIDRTLKAAEVILAHFDQYRQAEAKILKGPHEDLENYLEAIDKLRSNIQFFGSKKGFKSSDGIVIHANNLLAKAISKLEDEFKQLLSSYRDARSNVLEESLQKLGVEKLNKDDVQKLQWEILEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFDSLSEQCFAEVTTNSVSMLLSFGEAIAKSKRSPEKLFVLLDMYEIMQELHSEVWLLKCEITNLDAISFVGLHFTLVTTLDVIYLTILRQDEAVKQSLREAEAEVVKCGVAWSRFLARIGFSNLPGFVLHFMLSVRTVPIWIGCCNK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01806 366 Gene3D Exocyst complex component Exo70 75 299 - -
Cca02g01806 366 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 154 275 - -
Cca02g01806 366 PANTHER EXOCYST COMPLEX PROTEIN EXO70 154 275 IPR004140 GO:0000145|GO:0006887
Cca02g01806 366 PANTHER EXOCYST COMPLEX PROTEIN EXO70 35 154 IPR004140 GO:0000145|GO:0006887
Cca02g01806 366 Pfam Exo70 exocyst complex subunit 193 276 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cca02g01806 366 Coils Coil 140 160 - -
Cca02g01806 366 SUPERFAMILY Cullin repeat-like 77 276 IPR016159 -
Cca02g01806 366 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 35 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01806 Cca-Chr2 37463711 37469032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01806 148 273 EXO70 exocyst subunit family AT5G03540 83.333 9.28e-69 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01806 K07195 - ccaj:109805001 298.13