Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01804 ATGTTAAAAGCAGTGGCTTCTGGGTTGTTGATTGCCTCCATCTTCACATGTGTATCTGCAACAGATAATGGATTTCCTAGATGTAACTGTGATGATGAGGCCAGCTTGTGGACTATTGAGAGCATTCTCGAGTGTCAAAGAATTGGAGATTTCTTGATTGCTGTGGCCTACTTCTCCATCCCTATTGAGCTGCTTTATTTCATTAGTTGCTCAAACGTCCCATTCAAATGGGTCCTTATCCAGTTCATTGCTTTCATTGTACTATGTGGATTGACACATTTGCTGAATGGGTGGACCTATGGCCCTCATACTTTCCAACTTATGGTGGCGCTTACTGTCGCTAAAATTCTCACTGCATTGGTGTCATGTGCCACTGCCATAACCCTCATCACTCTGATTCCTTTGCTTCTCAAAGTGAAGGTCAGGGAGTTCATGTTGAAGAAAAAGACATGGGATCTTGGACGCGAGGTTGATAATATTATGAGACAAAGGGAGGCTGCAATGCATGTAAGAATGCTTACTCAGGAGATACGCAAGTCACTTGATAGACATACGGTTCTGTACACCACATTGGTGGAGCTGTCTAAAACGCTTGGCTTGCAAAATTGTGCTGTGTGGATGCCTAATGTTGATAAAACTGAGATGAACCTCACCCATGAATTGAATGGGAGGAATTTTAATTTGTCTATACCCATTAGTGATCCAGATGTTGTGAGAATTAAGGGAAGCGATGGTGTGAATATACTAAGCTCCGACTCAGCACTTGCGGTTGGGAGTAGTGGAGTTTCTGGAGAGCCAGGACCGGTTGCAGCAATCCGAATGCCAATGCTACGGGTTTGTAATTTCAAAGGAGGAACACCTGAGCTAAGACAGACTTGTTATGCAATATTGGTCCTAATTCTTCCTGCTGGAGAGACTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTAGCAGTGGCTCTATCTCATGCTGCAATTCTTGAAGAGTCCCAACTTATGAGAGAGAAGTTGGAGGAGCAAAATCGAGCTTTGCAATTGGCGAGAAAGAATGCTTTGATGGCAAGCCAGGCAAGAAATGCATTTCAGAAAGTCATGAGTGATGGAATGAGGAGGCCAATGCACTCAATTTTGGGATTGCTTTCAATGATACAAGATGATAATTTAAAGAATGAACAAAAACTTATTGTGGATGCAATGCTAAGAACCAGCAACGTCCTATCAAACTTGATAAATGATGCCATGGACAACTCTGCAAAGGACGACGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACATTCCTTGCTGAAGGAAGCGGCTTGCCTTTCCAAGTGCATGTGTGTTTATAGGGGCTTTGGTTTTATGGTTGAGGTTGAGAAGTCTTTGCCTGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTACATATGGTTGGGAACCTACTGGAACACAACCATGGGGGAGGGATCCTTGTATTTCGGGTTTTTGCTGAAACTGGAAGTCAAGGAAGGAGTGACAAAGGGTGGACAACCTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGTGATTCTGAAGTTGGAAGCTCAGTTTCTTCAGGACTTGGTGGTAGGAAATATAACAGTGATAGGGTTGCGGGCAGATTGAGCTTCAGCATTTGCAAGAAGGTAGTCCAGTTGATGCAGGGGAACATATGGTTGGTTCCTTGCACTCATGGTTATCCTCAAAGCATGACACTTCTTCTGCGGTTTCAACTACGACCATCCATTACCATTGCCATCTCTGAACCTGGAGAATCTTCTGAGCGTACAAATTCCAATTCAATGCTGAGTGGTCGGCAAGTTCTTTTAGTGGACAATGATGATGTAAATAGAGCAGTGACCCAAAGATTGCTTCAGAAACTAGGCTGTGTTGTAACTGCAGTTTCTTCAGCATTTGAATGCCTTACTGTGATTGGACCTGCTGGATCTTCTGTTGAAGTCATTCTTTTAGATCTTCACATGCCTGATTTAGATGGCTTTGAAGTTGCCACAAGGATTCGAAAGTTTAGAAGTGCAAACCGGCCTATTATTGTTGCCTTGACTGCAAGTGCAGGAGAAGATTTGTGGGACAGATGCATGCAAGTTGGTATCAATGGAGTTATCCGCAAACCAGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGAATCCTGATGCAGGGAAATAAT 2271 0.4315 MLKAVASGLLIASIFTCVSATDNGFPRCNCDDEASLWTIESILECQRIGDFLIAVAYFSIPIELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVAKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVDNIMRQREAAMHVRMLTQEIRKSLDRHTVLYTTLVELSKTLGLQNCAVWMPNVDKTEMNLTHELNGRNFNLSIPISDPDVVRIKGSDGVNILSSDSALAVGSSGVSGEPGPVAAIRMPMLRVCNFKGGTPELRQTCYAILVLILPAGETRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQLARKNALMASQARNAFQKVMSDGMRRPMHSILGLLSMIQDDNLKNEQKLIVDAMLRTSNVLSNLINDAMDNSAKDDGRFPLEIRSFGLHSLLKEAACLSKCMCVYRGFGFMVEVEKSLPDNVMGDERRVFQVILHMVGNLLEHNHGGGILVFRVFAETGSQGRSDKGWTTWRPSSSSGDVNIRFEIGINSSDSEVGSSVSSGLGGRKYNSDRVAGRLSFSICKKVVQLMQGNIWLVPCTHGYPQSMTLLLRFQLRPSITIAISEPGESSERTNSNSMLSGRQVLLVDNDDVNRAVTQRLLQKLGCVVTAVSSAFECLTVIGPAGSSVEVILLDLHMPDLDGFEVATRIRKFRSANRPIIVALTASAGEDLWDRCMQVGINGVIRKPVLLQGIASELRRILMQGNN 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01804 757 Coils Coil 334 361 - -
Cca02g01804 757 ProSiteProfiles Histidine kinase domain profile. 371 585 IPR005467 -
Cca02g01804 757 SMART gaf_1 182 338 IPR003018 GO:0005515
Cca02g01804 757 PIRSF Ethylen_sen_hybr_HK 1 757 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Cca02g01804 757 Pfam Response regulator receiver domain 635 742 IPR001789 GO:0000160
Cca02g01804 757 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 429 IPR036097 GO:0000155|GO:0007165
Cca02g01804 757 Gene3D - 161 329 IPR029016 -
Cca02g01804 757 Pfam GAF domain 182 328 IPR003018 GO:0005515
Cca02g01804 757 Gene3D - 428 606 IPR036890 -
Cca02g01804 757 Gene3D - 633 756 - -
Cca02g01804 757 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 589 IPR036890 -
Cca02g01804 757 Pfam His Kinase A (phospho-acceptor) domain 365 427 IPR003661 GO:0000155|GO:0007165
Cca02g01804 757 Gene3D - 330 427 - -
Cca02g01804 757 SMART REC_2 633 752 IPR001789 GO:0000160
Cca02g01804 757 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Cca02g01804 757 SUPERFAMILY GAF domain-like 185 331 - -
Cca02g01804 757 SUPERFAMILY CheY-like 630 752 IPR011006 -
Cca02g01804 757 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Cca02g01804 757 PANTHER ETHYLENE RESPONSE SENSOR 2 12 756 - -
Cca02g01804 757 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 12 756 - -
Cca02g01804 757 CDD REC_ETR-like 634 748 - -
Cca02g01804 757 CDD HATPase_ETR2_ERS2-EIN4-like 470 602 - -
Cca02g01804 757 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
Cca02g01804 757 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 591 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01804 Cca-Chr2 37456779 37459592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01804 22 752 Miscellaneous Gene Families AT3G04580 57.930 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca02g01804 GAF 2.5e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01804 K14509 - gmx:100787425 1348.95