Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01803 ATGAGTATAGAGATGCAAGTAGAAAGAACTAACCAACCAGCCATAAGAGCAACTCTGGCAAATCCTTGGTGGACAGGTCAGGGGGGGTTATCTGGGGTTGACCCAGGAACCCATTCACCTGGCCTAAGCAAACGCCACGCAGACCTTGCAATCAACGAAACCAGTGGTGGCCACAGTAGAGAAGAAGATGAAGACAATAGAGATGAACCTAAAGAGGGTGCAGTCGAGGTTGGAAACCGCAGACCAAGAGGAAGACCTCCTGGATCCAAAAACAAGCCAAAACCACCCATTTTCGTGACAAGGGACAGCCCAAACGCCCTAAGGAGCCACGTGATGGAGATAACTGGAGGAGCTGATGTTGCAGAAAGTGTAGCCCAATTCGCAAGGAGGCGTCAACGTGGGGTTTGTGTGCTCAGTGGTAGTGGCTCGGTGGCCAATGTTACTATTAGACAGCCTGCAGCTCCTGGTGCTGTGGTGGCCCTTCATGGAAGGTTTGAGATTCTGTCCCTAACAGGGACTTTCCTACCTGGCCCTGCTCCTCCAGGAGCTACAGGACTCACTGTGTATCTCGCTGGAGGACCGGGTCAGATAGTGGGAGGAAGTGTGGTTGGATCTCTAGTTGCAGCAGGACCGGTTATGGTGATTGCTGCAACTTTTGCCAATGCAACCTATGAGAGACTGCCGCTTGATGAAGATGATGAGGGGCCTAGTTCGGCGGCGGCGGCACAGGGTGGAGGATCGCCACCGCTTGGAATTGGAAGCAGTGGGGGTGGCCAGTTGCAAGGTGGAATTCCAGATCCATCATCTATGCCTTTGTATAATCTTCCACCAAATGGAGGAGGGGGCCAGGTAGGGCATGAAGCTCTTGCTTGGGCTCATGGAAGGCCACCTTTCTGA 897 0.5307 MSIEMQVERTNQPAIRATLANPWWTGQGGLSGVDPGTHSPGLSKRHADLAINETSGGHSREEDEDNRDEPKEGAVEVGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEITGGADVAESVAQFARRRQRGVCVLSGSGSVANVTIRQPAAPGAVVALHGRFEILSLTGTFLPGPAPPGATGLTVYLAGGPGQIVGGSVVGSLVAAGPVMVIAATFANATYERLPLDEDDEGPSSAAAAQGGGSPPLGIGSSGGGQLQGGIPDPSSMPLYNLPPNGGGGQVGHEALAWAHGRPPF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01803 298 MobiDBLite consensus disorder prediction 55 79 - -
Cca02g01803 298 CDD DUF296 108 219 IPR005175 -
Cca02g01803 298 PIRSF ESCAROLA 32 298 IPR014476 GO:0003680
Cca02g01803 298 MobiDBLite consensus disorder prediction 18 104 - -
Cca02g01803 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 220 IPR005175 -
Cca02g01803 298 PANTHER DNA-BINDING PROTEIN-LIKE 51 298 - -
Cca02g01803 298 Gene3D - 107 234 - -
Cca02g01803 298 ProSiteProfiles PPC domain profile profile. 104 241 IPR005175 -
Cca02g01803 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 51 298 IPR014476 GO:0003680
Cca02g01803 298 MobiDBLite consensus disorder prediction 228 298 - -
Cca02g01803 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01803 Cca-Chr2 37433174 37435207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01803 19 298 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 61.775 1.41e-102 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01803 - - var:108341460 441.425