Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01791 ATGGATCTTGTAAGCAGAAGATACTTGATTTATGTGTCACAACATGGGtcacagtcacaatcacaagcacaagaactttctccaatcacaaGTCCAGGGAGTTCAATCTTTCACCCTCATCTGCATTCTTCTAGCACTAGTTTTCCCATCATTGCAATTGCTATAATAGGAATAATGGCCACAGCTTTCTTGCTGGTTAGCTACTACATCTTTGTCATCAAATGCTGCCTCAATTGGCACCGTATTGATGTCCTAAGACGTTTCTCTCCATCCAGAAGGCGTGAAGATCCATCACCAATATACTCACCGGGCATAGAATCTCGTGGACTAGATGAGGCACTGATCCGGTTAATTCCAGTGATTCAATACAAAACACAAGGGAAAACAGAAGAGAGAAGATTCTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTCAGGATTATACCCAATTGTGGCCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGGGCAATGCCAATTGCCCTCTTTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACATTGATCAGCTTCTCACCCTAAGGCCTTCTTCCCCTCAGGATCAAAACCCTCCAAGGCAAAACCTCATTGGAGGTGATGAAGATTTTGTTGTGATTGAATTGGGTAATGACCATGATAGAAGCCAAAATTTGCAAGAAAGAGGCAATGGTTTGGAGTTACCATTACCAACATGCCTTATTAGTCCTTCATCAAAGAAAGCAATGAAACTGCATAAGGTGACAAGCATGGGGGATGAGTGTATTGATATTAGAGCCAAAGATGAGCAGTTCTCAGTCCAACCTATCAGAAGGTCTTTCTCCATGGACTCTTCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCTTCACAACAGGCAAGTCAATGAGGTCAGCACCATTGAAGGCTGCAGTGGTAGTAGTGGTAGAGTCAAAAGATCATTCTTTTCCTTCGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTCTTTCTTTGGATCCCTGA 1062 0.4105 MDLVSRRYLIYVSQHGSQSQSQAQELSPITSPGSSIFHPHLHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDVLRRFSPSRRREDPSPIYSPGIESRGLDEALIRLIPVIQYKTQGKTEERRFCECAVCLNEFQEDEKLRIIPNCGHVFHIDCIDVWLQGNANCPLCRTSISLTSRFHIDQLLTLRPSSPQDQNPPRQNLIGGDEDFVVIELGNDHDRSQNLQERGNGLELPLPTCLISPSSKKAMKLHKVTSMGDECIDIRAKDEQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLHNRQVNEVSTIEGCSGSSGRVKRSFFSFGHGSRSRSSVQPLSLDP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01791 353 Pfam Ring finger domain 136 179 IPR001841 -
Cca02g01791 353 PANTHER RING-H2 FINGER PROTEIN ATL16 31 352 - -
Cca02g01791 353 SUPERFAMILY RING/U-box 136 185 - -
Cca02g01791 353 CDD RING-H2_PA-TM-RING 136 179 - -
Cca02g01791 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 184 IPR013083 -
Cca02g01791 353 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Cca02g01791 353 PANTHER RING-H2 FINGER PROTEIN ATL16 31 352 IPR044600 GO:0016567|GO:0016740
Cca02g01791 353 SMART ring_2 137 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01791 Cca-Chr2 37306397 37308234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01791 39 353 C3H Transcription Factor Family AT1G04360 52.676 4.10e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01791 - - gmx:100775286 582.022