Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01789 ATGGATGAACAAGGCTCAAGGGGCAGGGGCAAGGAGGACGCTGGAGATGTCCGCTACCGGGGGGTGCGGCGCCGGCCATGGGGGAAGTTCGCGGCGGAGATTCGAGACTCCACAAGGCAGGGTCAGAGGGTGTGGCTTGGAACTTTCAACACGGCGGAGGAAGCAGCCAGAGCCTATGATAGAGCTGCTTATGCCATGCGAGGTTCATTTGCAATCCTCAACTTCCCCAACGAGTACCCTGTCACATCTGCTGCTGCCActcattcctctgctgcctcctcctcctcagcctcatcttcTAGGCATGCCAATGTGGAAGCCAGAGGTAGAAATGAGCAAGCAAGGGAAGTCTTTGAGTTTGAGTACTTGGATGATAGGTTGTTGGAGGAGCTTCTTGATTTTGAGGACAAAAAGAAAAAGGGATAA 426 0.4859 MDEQGSRGRGKEDAGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGSFAILNFPNEYPVTSAAATHSSAASSSSASSSRHANVEARGRNEQAREVFEFEYLDDRLLEELLDFEDKKKKG 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01789 141 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Cca02g01789 141 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Cca02g01789 141 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Cca02g01789 141 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Cca02g01789 141 MobiDBLite consensus disorder prediction 83 104 - -
Cca02g01789 141 PANTHER OS09G0571700 PROTEIN 12 135 - -
Cca02g01789 141 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Cca02g01789 141 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Cca02g01789 141 PANTHER DNA-BINDING DOMAIN 12 135 IPR044808 GO:0003700|GO:0009873
Cca02g01789 141 MobiDBLite consensus disorder prediction 83 111 - -
Cca02g01789 141 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Cca02g01789 141 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01789 Cca-Chr2 37288164 37288589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01789 13 139 AP2-EREBP Transcription Factor Family AT3G23230 62.500 3.26e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g01789 AP2 3.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01789 - - gmx:100775830 183.341