Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01788 ATGGAGGAGCACCAGCAGAGGGGGAAGCAAGGCAAGGAAGAGGTGCGGTTCCGCGGCGTGCGGCGGCGGCCGTGGGGGAAGTACGCGGCGGAGATAAGAGATCCGTCGAAGCAAGGGTCGAGGCTGTGGTTGGGGACATTTGACACGGCTGAAGAAGCTGCTAGGGCTTATGATCGTGCAGCTTTTAACTTGAGGGGCCATCTTGCAATTCTCAATTTTCCTAATGAGTACTATTCTCAAATAAGGGGTTCACCACCATATCCTCCTCATTTGGCAACACCTTCTCCTCGTGCTAGTGGCAGCACTTCTGGTGCACCAAGGCACCTTTTCGAGATTCCTTGTTTGGATGATAAGGTGTTGGAGGATCTTCTTGATCAGTCTGaggagcacaagaagaaaaagaaaggagattga 414 0.4903 MEEHQQRGKQGKEEVRFRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPNEYYSQIRGSPPYPPHLATPSPRASGSTSGAPRHLFEIPCLDDKVLEDLLDQSEEHKKKKKGD 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01788 137 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Cca02g01788 137 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Cca02g01788 137 PANTHER ETHYLENE RESPONSE FACTOR 1 128 - -
Cca02g01788 137 PANTHER DNA-BINDING DOMAIN 1 128 IPR044808 GO:0003700|GO:0009873
Cca02g01788 137 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Cca02g01788 137 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Cca02g01788 137 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Cca02g01788 137 MobiDBLite consensus disorder prediction 81 107 - -
Cca02g01788 137 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cca02g01788 137 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Cca02g01788 137 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01788 Cca-Chr2 37262376 37262789 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01788 14 132 AP2-EREBP Transcription Factor Family AT3G23230 62.097 1.17e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g01788 AP2 1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01788 - - gmx:100793703 238.424