Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01786 ATGGATTCCTCTTCCCTCTTCAACTCCCCCACTTCCTCTGACTCCTCCTGGGGCTGGGACGGCTACCTCCCCTTCAACGAGAACGACCCGGAGGAGATGCTCCTCTACGGCATGATCGCCACCGCCACCGCCCCCGCCCCCGAGGCCACCAAGGAGAAGTACCGTGGTGTGCGCCGCCGCCCCTGGGGGAAGTTCGCCGCCGAGATAAGGGACTCGACGCGGCACGGCACCAGGGTGTGGCTGGGGACATTCGACAGCGCAGAGGCGGCGGCCCTGGCTTACGACCAAGCGGCCTTTTCCATGAGAGGGTCGGCGGCCATACTGAACTTCCCCGTTGACAGGGTGAGAGAGTCCCTGAAAGAGATGAACTACGCAAACGCCGAGGAGGATGGCTGCTCCCCTGTCGTGGCTCTCAAGAGGAAGCACTCCCTCCGAAGGAAGATTGGTGTTAAGAAGACCAAACAGACTACCCTTCCCAATGCCATCGTCTTCCAAGACCTCGGCGCTGATTACTTGGAACACTTGTTGATGtcctcttcctcttcctcctcctcctcctcctcctcctcctctccttctcATTGA 585 0.5556 MDSSSLFNSPTSSDSSWGWDGYLPFNENDPEEMLLYGMIATATAPAPEATKEKYRGVRRRPWGKFAAEIRDSTRHGTRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVDRVRESLKEMNYANAEEDGCSPVVALKRKHSLRRKIGVKKTKQTTLPNAIVFQDLGADYLEHLLMSSSSSSSSSSSSSSPSH 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01786 194 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Cca02g01786 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 50 179 - -
Cca02g01786 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 20 43 - -
Cca02g01786 194 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Cca02g01786 194 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Cca02g01786 194 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Cca02g01786 194 SMART rav1_2 53 117 IPR001471 GO:0003700|GO:0006355
Cca02g01786 194 ProSiteProfiles AP2/ERF domain profile. 53 111 IPR001471 GO:0003700|GO:0006355
Cca02g01786 194 PANTHER DNA-BINDING DOMAIN 50 179 IPR044808 GO:0003700|GO:0009873
Cca02g01786 194 PANTHER DNA-BINDING DOMAIN 20 43 IPR044808 GO:0003700|GO:0009873
Cca02g01786 194 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Cca02g01786 194 Gene3D AP2/ERF domain 52 113 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01786 Cca-Chr2 37233049 37234057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01786 23 184 AP2-EREBP Transcription Factor Family AT3G23240 59.783 2.28e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g01786 AP2 3.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01786 K14516 - gmx:100790598 251.521