Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01766 ATGAATTCAGAGAAGCCAGTCAGCCCTGAGAATTTAAGTGAAGAAAATGATCATCAAGAAGAAGCACATGATGACAGTGGTGGAACCAAACGCTCCTATGAGTGCACATTCTGCAAAAGAGGCTTCACAAACGCTCAGGCTTTAGGGGGTCATATGAATATTCATAGGAAAGACAGGGCCAAGGCCAAACAATTCACGCCAGAAGCTTCATCACCAATAATTAACAAATTCAACAACGATGAATCCATGGCCCTTCCTTTTGTCTCAGAAATTTTAAGCCAGCCCACAAGGCCTAATTACTCAATTTTGGAGTCACAGAGGAACTGTGACGTGCACTTTCATCCACCACCACCTGCACATGCCTTTTATTATGAGTTTTATAACCCAAGGTCTCGGCCTTCGAGTTTGAACCAAGAGCTTCGGGATGCCAATTTGAGTCTCCAAATTGGTCCAAGTCATCATGTTGATGATATTCATCAAGTCAGGAGAGGAAATCAGAAAGATAAAGAAGTGGACTTGGAGCTCAGACTTGGCCATGATCCATACTGA 549 0.4317 MNSEKPVSPENLSEENDHQEEAHDDSGGTKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQFTPEASSPIINKFNNDESMALPFVSEILSQPTRPNYSILESQRNCDVHFHPPPPAHAFYYEFYNPRSRPSSLNQELRDANLSLQIGPSHHVDDIHQVRRGNQKDKEVDLELRLGHDPY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01766 182 Gene3D Classic Zinc Finger 11 85 - -
Cca02g01766 182 PANTHER OS07G0101800 PROTEIN 10 181 - -
Cca02g01766 182 MobiDBLite consensus disorder prediction 1 30 - -
Cca02g01766 182 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Cca02g01766 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Cca02g01766 182 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Cca02g01766 182 Pfam C2H2-type zinc finger 33 57 - -
Cca02g01766 182 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 10 181 - -
Cca02g01766 182 SMART c2h2final6 33 55 IPR013087 -
Cca02g01766 182 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01766 Cca-Chr2 36853661 36854874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01766 15 179 C2H2 Transcription Factor Family AT3G09290 35.329 3.11e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01766 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01766 - - vun:114191365 286.574